A lightweight data-driven spiking neuronal network model of Drosophila olfactory nervous system with dedicated hardware support

被引:0
作者
Nanami, Takuya [1 ]
Yamada, Daichi [2 ]
Someya, Makoto [3 ]
Hige, Toshihide [2 ,4 ,5 ]
Kazama, Hokto [3 ]
Kohno, Takashi [1 ]
机构
[1] Univ Tokyo, Inst Ind Sci, Meguro Ku, Tokyo, Japan
[2] Univ North Carolina Chapel Hill, Dept Biol, Chapel Hill, NC USA
[3] RIKEN, Ctr Brain Sci, Wako, Saitama, Japan
[4] Univ North Carolina Chapel Hill, Dept Cell Biol & Physiol, Chapel Hill, NC USA
[5] Univ North Carolina Chapel Hill, Integrat Program Biol & Genome Sci, Chapel Hill, NC USA
基金
美国国家卫生研究院; 日本学术振兴会; 美国国家科学基金会;
关键词
spiking neuronal network; PQN model; Drosophila; field-programmable gate array; olfactory nervous system; MUSHROOM BODY; CHOLINE-ACETYLTRANSFERASE; SYNAPTIC-TRANSMISSION; LOCAL INTERNEURONS; ANTENNAL LOBE; GAIN-CONTROL; REPRESENTATIONS; MEMORY; OPTIMIZATION; OSCILLATIONS;
D O I
10.3389/fnins.2024.1384336
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Data-driven spiking neuronal network (SNN) models enable in-silico analysis of the nervous system at the cellular and synaptic level. Therefore, they are a key tool for elucidating the information processing principles of the brain. While extensive research has focused on developing data-driven SNN models for mammalian brains, their complexity poses challenges in achieving precision. Network topology often relies on statistical inference, and the functions of specific brain regions and supporting neuronal activities remain unclear. Additionally, these models demand huge computing facilities and their simulation speed is considerably slower than real-time. Here, we propose a lightweight data-driven SNN model that strikes a balance between simplicity and reproducibility. The model is built using a qualitative modeling approach that can reproduce key dynamics of neuronal activity. We target the Drosophila olfactory nervous system, extracting its network topology from connectome data. The model was successfully implemented on a small entry-level field-programmable gate array and simulated the activity of a network in real-time. In addition, the model reproduced olfactory associative learning, the primary function of the olfactory system, and characteristic spiking activities of different neuron types. In sum, this paper propose a method for building data-driven SNN models from biological data. Our approach reproduces the function and neuronal activities of the nervous system and is lightweight, acceleratable with dedicated hardware, making it scalable to large-scale networks. Therefore, our approach is expected to play an important role in elucidating the brain's information processing at the cellular and synaptic level through an analysis-by-construction approach. In addition, it may be applicable to edge artificial intelligence systems in the future.
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页数:20
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共 88 条
[1]   A Scalable FPGA Architecture for Randomly Connected Networks o Hodgkin-Huxley Neurons [J].
Akbarzadeh-Sherbaf, Kaveh ;
Abdoli, Behrooz ;
Safari, Saeed ;
Vahabie, Abdol-Hossein .
FRONTIERS IN NEUROSCIENCE, 2018, 12
[2]   Combined analog and action potential coding in hippocampal mossy fibers [J].
Alle, H ;
Geiger, JRP .
SCIENCE, 2006, 311 (5765) :1290-1293
[3]   FPGA vs. ASIC for low power applications [J].
Amara, Amara ;
Amiel, Frederic ;
Ea, Thomas .
MICROELECTRONICS JOURNAL, 2006, 37 (08) :669-677
[4]   Localized inhibition in the Drosophila mushroom body [J].
Amin, Hoger ;
Apostolopoulou, Anthi A. ;
Suarez-Grimalt, Raquel ;
Vrontou, Eleftheria ;
Lin, Andrew C. .
ELIFE, 2020, 9
[5]   Neural circuit mechanisms for transforming learned olfactory valences into wind-oriented movement [J].
Aso, Yoshinori ;
Yamada, Daichi ;
Bushey, Daniel ;
Hibbard, Karen L. ;
Sammons, Megan ;
Otsuna, Hideo ;
Shuai, Yichun ;
Hige, Toshihide .
ELIFE, 2023, 12
[6]   Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila [J].
Aso, Yoshinori ;
Sitaraman, Divya ;
Ichinose, Toshiharu ;
Kaun, Karla R. ;
Vogt, Katrin ;
Belliart-Guerin, Ghislain ;
Placais, Pierre-Yves ;
Robie, Alice A. ;
Yamagata, Nobuhiro ;
Schnaitmann, Christopher ;
Rowell, William J. ;
Johnston, Rebecca M. ;
Ngo, Teri-T B. ;
Chen, Nan ;
Korff, Wyatt ;
Nitabach, Michael N. ;
Heberlein, Ulrike ;
Preat, Thomas ;
Branson, Kristin M. ;
Tanimoto, Hiromu ;
Rubin, Gerald M. .
ELIFE, 2014, 3 :e04580
[7]   Dopaminergic neurons write and update memories with cell-type-specific rules [J].
Aso, Yoshinori ;
Rubin, Gerald M. .
ELIFE, 2016, 5
[8]   The neuronal architecture of the mushroom body provides a logic for associative learning [J].
Aso, Yoshinori ;
Hattori, Daisuke ;
Yu, Yang ;
Johnston, Rebecca M. ;
Iyer, Nirmala A. ;
Ngo, Teri-T B. ;
Dionne, Heather ;
Abbott, L. F. ;
Axel, Richard ;
Tanimoto, Hiromu ;
Rubin, Gerald M. .
ELIFE, 2014, 3 :e04577
[9]   Memory-Relevant Mushroom Body Output Synapses Are Cholinergic [J].
Barnstedt, Oliver ;
Owald, David ;
Felsenberg, Johannes ;
Brain, Ruth ;
Moszynski, John-Paul ;
Talbot, Clifford B. ;
Perrat, Paola N. ;
Waddell, Scott .
NEURON, 2016, 89 (06) :1237-1247
[10]   Model of transient oscillatory synchronization in the locust antennal lobe [J].
Bazhenov, M ;
Stopfer, M ;
Rabinovich, M ;
Huerta, R ;
Abarbanel, HDI ;
Sejnowski, TJ ;
Laurent, G .
NEURON, 2001, 30 (02) :553-567