Identification of osteoblastic autophagy-related genes for predicting diagnostic markers in osteoarthritis

被引:1
作者
Cai, Rulong [1 ,2 ,3 ,4 ,5 ]
Jiang, Qijun [5 ,6 ]
Chen, Dongli [7 ]
Feng, Qi [1 ,2 ,3 ]
Liang, Xinzhi [1 ,2 ,3 ,4 ,5 ]
Ouyang, Zhaoming [1 ,2 ,3 ,4 ,5 ]
Liao, Weijian [1 ,2 ,3 ,4 ,5 ]
Zhang, Rongkai [1 ,2 ,3 ,4 ,5 ]
Fang, Hang [1 ,2 ,3 ,4 ]
机构
[1] Southern Med Univ, Ctr Orthoped Surg, Dept Joint Surg, Affiliated Hosp 3, Guangzhou 510630, Peoples R China
[2] Acad Orthoped, Guangzhou 510630, Guangdong, Peoples R China
[3] Orthoped Hosp Guangdong Prov, Guangzhou 510630, Peoples R China
[4] Guangdong Prov Key Lab Bone & Joint Degenerat Dis, Guangzhou 510630, Guangdong, Peoples R China
[5] Southern Med Univ, Sch Clin Med 3, Guangzhou 510515, Peoples R China
[6] Southern Med Univ, Affiliated Hosp 3, Dept Urol, Guangzhou 510630, Peoples R China
[7] Univ Hong Kong, Shenzhen Hosp, Dept Ultrasound, Shenzhen 518053, Peoples R China
基金
中国国家自然科学基金;
关键词
SUBCHONDRAL BONE; GROWTH-FACTOR; ARTICULAR-CARTILAGE; ANGIOGENESIS; EXPRESSION; VEGF; DIFFERENTIATION; PROGRESSION; DISEASE; ROLES;
D O I
10.1016/j.isci.2024.110130
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The development of osteoarthritis (OA) involves subchondral bone lesions, but the role of osteoblastic autophagy-related genes (ARGs) in osteoarthritis is unclear. Through integrated analysis of single -cell dataset, Bulk RNA dataset, and 367 ARGs extracted from GeneCards, 40 ARGs were found. By employing multiple machine learning algorithms and PPI networks, three key genes (DDIT3, JUN, and VEGFA) were identified. Then the RF model constructed from these genes indicated great potential as a diagnostic tool. Furthermore, the model's effectiveness in predicting OA has been confirmed through external validation datasets. Moreover, the expression of ARGs was examined in osteoblasts subject to excessive mechanical stress, human and mouse tissues. Finally, the role of ARGs in OA was confirmed through co -culturing explants and osteoblasts. Thus, osteoblastic ARGs could be crucial in OA development, providing potential diagnostic and treatment strategies.
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页数:21
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