Hybrid algorithm of Bayesian optimization and evolutionary algorithm in crystal structure prediction

被引:4
|
作者
Yamashita, Tomoki [1 ]
Kino, Hiori [2 ]
Tsuda, Koji [2 ,3 ,4 ]
Miyake, Takashi [5 ]
Oguchi, Tamio [6 ]
机构
[1] Nagaoka Univ TechnologyTop Runner Incubat Ctr Acad, Fus, Nagaoka, Japan
[2] Natl Inst Mat Sci, Res & Serv Div Mat Data & Integrated Syst, Tsukuba, Japan
[3] Univ Tokyo, Grad Sch Frontier Sci, Kashiwa, Japan
[4] RIKEN, Ctr Adv Intelligence Project, Tokyo, Japan
[5] Natl Inst Adv Ind Sci & Technol, Res Ctr Computat Design Adv Funct Mat, Tsukuba, Japan
[6] Osaka Univ, Ctr Spintron Res Network, Toyonaka, Japan
来源
SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS-METHODS | 2022年 / 2卷 / 01期
基金
日本科学技术振兴机构;
关键词
Crystal structure prediction; Bayesian optimization; evolutionary algorithm; first-principles calculations; machine learning; materials informatics; TOTAL-ENERGY CALCULATIONS; WAVE; PSEUDOPOTENTIALS; CHEMISTRY;
D O I
10.1080/27660400.2022.2055987
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
We propose a highly efficient searching algorithm in crystal structure prediction. The searching algorithm is a hybrid of the evolutionary algorithm and Bayesian optimization. The evolutionary algorithm is widely used in crystal structure prediction, and the Bayesian optimization is one of the selection-type algorithms we have developed. We have performed simulations of crystal structure prediction to compare the success rates of the random search, evolutionary algorithm, Bayesian optimization, and hybrid algorithm for up to ternary systems such as Si, Y2Co17, Al2O3, and CuGaS2, using the CrySPY code. These results demonstrate that the evolutionary algorithm can generate structures more efficiently than random structure generation, and the Bayesian optimization can efficiently select potential candidates from a large number of structures. Moreover, the hybrid algorithm, which has the advantages of both, is proved to be the most efficient searching algorithm among them.
引用
收藏
页码:67 / 74
页数:8
相关论文
共 50 条
  • [31] USPEX - Evolutionary crystal structure prediction
    Glass, Colin W.
    Oganov, Artem R.
    Hansen, Nikolaus
    COMPUTER PHYSICS COMMUNICATIONS, 2006, 175 (11-12) : 713 - 720
  • [32] Prediction of tubular solar still performance by machine learning integrated with Bayesian optimization algorithm
    Wang, Yunpeng
    Kandeal, A. W.
    Swidan, Ahmed
    Sharshir, Swellam W.
    Abdelaziz, Gamal B.
    Halim, M. A.
    Kabeel, A. E.
    Yang, Nuo
    APPLIED THERMAL ENGINEERING, 2021, 184
  • [33] Constrained Optimization Evolutionary Algorithm
    Guo Meng
    Qu Hongjian
    PROCEEDINGS OF THE 8TH WSEAS INTERNATIONAL CONFERENCE ON APPLIED COMPUTER AND APPLIED COMPUTATIONAL SCIENCE: APPLIED COMPUTER AND APPLIED COMPUTATIONAL SCIENCE, 2009, : 446 - +
  • [34] XTALOPT version r 1 1: An open-source evolutionary algorithm for crystal structure prediction
    Avery, Patrick
    Falls, Zackary
    Zurek, Eva
    COMPUTER PHYSICS COMMUNICATIONS, 2018, 222 : 418 - 419
  • [35] Improvement of look ahead based on quadratic approximation for crystal structure prediction
    Yamashita, Tomoki
    Sekine, Hirotaka
    SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS-METHODS, 2022, 2 (01): : 84 - 90
  • [36] XTALOPT Version r10: An open-source evolutionary algorithm for crystal structure prediction
    Avery, Patrick
    Falls, Zackary
    Zurek, Eva
    COMPUTER PHYSICS COMMUNICATIONS, 2017, 217 : 210 - 211
  • [37] XTALOPT version r9: An open-source evolutionary algorithm for crystal structure prediction
    Falls, Zackary
    Lonie, David C.
    Avery, Patrick
    Shamp, Andrew
    Zurek, Eva
    COMPUTER PHYSICS COMMUNICATIONS, 2016, 199 : 178 - 179
  • [38] XTALOPT version r7: An open-source evolutionary algorithm for crystal structure prediction
    Lonie, David C.
    Zurek, Eva
    COMPUTER PHYSICS COMMUNICATIONS, 2011, 182 (10) : 2305 - 2306
  • [39] A Hybrid Evolutionary Algorithm Combining Ant Colony Optimization and Simulated Annealing
    Xu XueMei
    ADVANCED TECHNOLOGY IN TEACHING - PROCEEDINGS OF THE 2009 3RD INTERNATIONAL CONFERENCE ON TEACHING AND COMPUTATIONAL SCIENCE (WTCS 2009), VOL 1: INTELLIGENT UBIQUITIOUS COMPUTING AND EDUCATION, 2012, 116 : 115 - 122
  • [40] A Dimensional Diversity Based Hybrid Multiobjective Evolutionary Algorithm for Optimization Problem
    Wang, Peng
    Zhang, Changsheng
    Zhang, Bin
    Liu, Tingting
    Wu, Jiaxuan
    INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE, 2016, 30 (07)