Flavobacterium psychraquaticum sp. nov., isolated from water system of Atlantic salmon (Salmo salar) smolts cultured in Chile

被引:1
作者
Avendano-Herrera, Ruben [1 ,2 ,3 ]
Saldarriga-Cordoba, Monica [2 ,4 ]
Poblete-Morales, Matias [1 ]
Irgang, Rute [1 ,2 ]
机构
[1] Univ Andres Bello, Fac Ciencias Vida, Lab Patol Organismos Acuat & Biotecnol Acuicola, Vina Del Mar, Chile
[2] Interdisciplinary Ctr Aquaculture Res INCAR, Vina Del Mar, Chile
[3] Univ Andres Bello, Ctr Invest Marina Quintay CIMARQ, Quintay, Chile
[4] Univ Bernardo OHiggins, Ctr Invest Recursos Nat & Sustentabilidad, Santiago, Chile
关键词
Atlantic salmon; aquatic; Chile; Flavobacterium; smolts; EMENDED DESCRIPTION; GENOME; PROPOSAL; FAMILY;
D O I
10.1099/ijsem.0.006309
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Strain LB-N7T, a novel Gram- negative, orange, translucent, gliding, rod- shaped bacterium, was isolated from water samples collected from an open system of Atlantic salmon (Salmo salar) smolts in a fish farm in Chile during a flavobacterial infection outbreak in 2015. Phylogenetic analysis based on 16S rRNA sequences (1337 bp) revealed that strain LB- N7T belongs to the genus Flavobacterium and is closely related to the type strains Flavobacterium ardleyense A2-1T (98.8 %) and Flavobacterium cucumis R2A45-3T (96.75 %). The genome size of strain LB- N7T was 2.93 Mb with a DNA G+C content 32.6 mol%. Genome comsediminis TH16-21T and Flavobacterium celericrescens TWA-26T. The calculated digital DNA-DNA hybridization values between strain LB-N7T and the closest related Flavobacterium strains were 23.3 % and the average nucleotide identity values ranged from 71.52 to 79.39 %. Menaquinone MK- 6 was the predominant respiratory quinone, followed by MK- 7. The major fatty acids were iso-C15: 0 and anteiso- C15:0. The primary polar lipids detected included nine unidentified lipids, two amounts of aminopospholipid and phospholipids, and a smaller amount of aminolipid. Phenotypic, genomic, and chemotaxonomic data suggest that strain LB-N7T (=CECT 30406T=RGM 3221T) represents as a novel bacterial species, for which the name Flavobacterium psychraquaticum sp. nov. is proposed.
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页数:10
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