An inter-laboratory comparison of probabilistic genotyping parameters and evaluation of performance on DNA mixtures from different laboratories

被引:4
作者
Boodoosingh, Safia [1 ]
Kelly, Hannah [2 ]
Curran, James M. [3 ]
Kalafut, Tim [1 ,4 ]
机构
[1] Sam Houston State Univ, Coll Criminal Justice, Dept Forens Sci, Huntsville, TX 77340 USA
[2] Inst Environm Sci & Research Ltd, Private Bag 92021, Auckland 1142, New Zealand
[3] Univ Auckland, Dept Stat, Private Bag 92019, Auckland 1142, New Zealand
[4] 1003 Bowers Blvd,Room 221B, Huntsville, TX 77340 USA
关键词
Forensic DNA analysis; Known mixtures; Likelihood ratios; Interlaboratory; Probabilistic genotyping; PROPOSITIONS; MODELS;
D O I
10.1016/j.fsigen.2024.103046
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Probabilistic genotyping (PG) is becoming the preferred standard for evidence interpretation, amongst forensic DNA laboratories, especially those in the United States. Various groups have expressed concern about reliability of PG systems, especially for mixtures beyond two contributors. Studies involving interlaboratory testing of known mixtures have been identified as ways to evaluate the reliability of PG systems. Reliability means different things in different contexts. However, it suffices here to think about it as a mixture of precision and accuracy. We might also consider whether a system is prone to producing misleading results - for example large likelihood ratios (LRs) when the POI is truly not a contributor, or small LRs when the POI is a truly a contributor. In this paper we show that the PG system STRmixTM is relatively unaffected by differences in parameter settings. That is, a DNA mixture that is analyzed in different laboratories using STRmixTM will result in different LRs, but less than 0.05% of these LRs would result in a different, or misleading conclusion as long as the LR is greater than 50. For the purposes of this study, we define LRs assigned using different parameters for the same mixtures as similar if the LR of the true POI is greater than the LRs generated for 99.9% of the general population. These findings are based on an interlaboratory study involving eight laboratories that provided twenty known DNA mixtures of two to four contributors and their individual laboratory STRmixTM parameters. The eight sets of laboratory parameters included differences in STR kits and PCR cycles as well as the peak, stutter, and locus specific amplification efficiency variances.
引用
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页数:10
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