Molecular Structure, Spectroscopic, Frontier Molecular Orbital Analysis, Molecular Docking Studies, and In Vitro DNA-Binding Studies of Osmium(II)-Cymene Complexes with Aryl Phosphine and Aryl Phosphonium Assemblies

被引:1
|
作者
Tapala, Kgaugelo C. [1 ]
Ndlangamandla, Nqobile G. [1 ]
Ngoepe, Mpho P. [1 ]
Clayton, Hadley S. [1 ]
机构
[1] Univ South Africa, Chem Dept, Unisa Sci Campus, ZA-1709 Johannesburg, South Africa
基金
新加坡国家研究基金会;
关键词
VIBRATIONAL-SPECTRA; OSMIUM COMPLEXES; INTERMOLECULAR INTERACTIONS; RUTHENIUM(II) COMPLEXES; HIRSHFELD SURFACES; CRYSTAL-STRUCTURES; ARENE COMPLEXES; OXALIPLATIN; OXALATES; BEARING;
D O I
10.1155/2024/6697523
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
X-ray crystallography, spectroscopy, computational methods, molecular docking studies, and in vitro DNA-binding studies have been useful in the investigations of intermolecular and intramolecular interactions of osmium-cymene oxalato complexes with aryl phosphine and aryl phosphonium groups in both primary and secondary coordination spheres, respectively. Molecular structures of the novel complexes PPh4[Os(eta(6)-p-cymene)Br(kappa(2)-O,O '-C2O4)] (1) and [Os(eta(6)-p-cymene) (kappa(2)-O,O '-C2O4)PPh3] (2) were resolved by single-crystal X-ray diffraction (XRD). Primary and secondary coordination sphere contacts were investigated using Hirshfeld surface analysis which was supported by molecular docking (MD) studies. The MD data obtained predicted significant differences in binding energy across three receptors for the two osmium complexes. An in vitro DNA-binding study was accomplished using UV-Vis spectroscopy which showed that both 1 and 2 bond with DNA through an intercalation approach. The optimized molecular geometry, frontier molecular orbital (E-HOMO and E-LUMO) energies, global electrophilicity index (omega), chemical hardness (eta), chemical potential (mu), and the energy band gap (E-HOMO-E-LUMO) were calculated utilizing density functional theory (DFT) methods. Computed structural parameters (bond lengths and angles) support the experimental single-crystal XRD data.
引用
收藏
页数:15
相关论文
共 50 条
  • [21] Synthesis, crystal structure, Hirshfeld surface analysis, DNA binding, DNA cleavage activity and molecular docking of a new Schiff base nickel(II) complex
    Dong, Jianfang
    Gao, Lei
    Zhang, Bo
    Xu, Tao
    Wang, Lei
    Kong, Jinming
    Li, Lianzhi
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (14) : 5224 - 5234
  • [22] Synthesis, structural characterization, thermal analysis, DFT, biocidal evaluation and molecular docking studies of amide-based Co(II) complexes
    Subhash
    Chaudhary, Ashu
    Mamta
    Jyoti
    CHEMICAL PAPERS, 2023, 77 (09) : 5059 - 5078
  • [23] Post-synthetic modification of supramolecular assemblies of β-diketonato Cu(II) complexes: comparing and contrasting the molecular topology by crystal structure and quantum computational studies
    Mahesha
    Pampa, K. J.
    Karthik, C. S.
    Hema, M. K.
    Mallu, P.
    Lokanath, N. K.
    CRYSTENGCOMM, 2021, 23 (24) : 4344 - 4369
  • [24] Design, Spectroscopic Analysis, DFT Calculations, Catalytic Evaluation, and Comprehensive In Silico and In Vitro Bioactivity Studies, Including Molecular Docking, of Novel Co(II) Complexes of 2-Hydroxy-5,3-(phenylallylidene)aminobenzoic Acid
    Kumari, Shalima
    Thakur, Maridula
    Kumar, Sachin
    JOURNAL OF INORGANIC AND ORGANOMETALLIC POLYMERS AND MATERIALS, 2025, 35 (03) : 1535 - 1562
  • [25] Synthesis, structure, Hirshfeld surface analysis, and molecular docking studies of the cocrystal between the Cu(II) complex of salicylic acid and uncoordinated piracetam
    Yuldasheva, Nazokat n.
    Abdullaev, Ikram i.
    Khudoyberganov, Oybek i.
    Gandjaeva, Lola a.
    Kodamboev, Pirnazar k.
    Samandarov, Elyor Sh.
    Normamatov, Adkhamjon S.
    Ruzmetov, Abror Kh.
    Yakubov, Yuldosh Y.
    Balakrishnan, C.
    Ibragimov, Bakhtiyar T.
    Ibragimov, Aziz B.
    TURKISH JOURNAL OF CHEMISTRY, 2024, 48 (06) : 809 - 820
  • [26] Copper(II) complexes based on thiosemicarbazone ligand: Preparation, crystal structure, Hirshfeld surface, energy framework, antiMycobacterium activity, in silico and molecular docking studies
    Souza, Rafael A. C.
    Costa, Waleska R. P.
    Faria, Eduardo de F.
    Bessa, Meliza A. de S.
    Menezes, Ralciane de P.
    Martins, Carlos H. G.
    Maia, Pedro I. S.
    Deflon, Victor M.
    Oliveira, Carolina G.
    JOURNAL OF INORGANIC BIOCHEMISTRY, 2021, 223
  • [27] Fluorescence and Absorption Titrations of Bio-relevant Imidazole Based Organometallic Pd(II) Complexes with DNA: Synthesis, Characterization, DNA Interaction, Antimicrobial, Cytotoxic and Molecular Docking Studies
    Thakor, Khyati P.
    Lunagariya, Miral V.
    Bhatt, Bhupesh S.
    Patel, Mohan N.
    JOURNAL OF INORGANIC AND ORGANOMETALLIC POLYMERS AND MATERIALS, 2019, 29 (06) : 2262 - 2273
  • [28] The interaction studies of novel imine ligands and palladium(II) complexes with DNA and BSA for drug delivery application: The anti-cancer activity and molecular docking evaluation
    Karami, Kazem
    Mehvari, Fariba
    Ramezanzade, Vahid
    Zakariazadeh, Mostafa
    Kharaziha, Mahshid
    Ramezanpour, Azar
    JOURNAL OF MOLECULAR LIQUIDS, 2022, 362
  • [29] Synthesis, spectroscopic characterization, crystal structure, DFT, ESI-MS studies, molecular docking and in vitro antibacterial activity of 1,5-benzodiazepin-2-one derivatives
    Chkirate, Karim
    Akachar, Jihane
    Hni, Brahim
    Hokelek, Tuncer
    Anouar, El Hassane
    Talbaoui, Ahmed
    Mague, Joel T.
    Sebbar, Nada Kheira
    Ibrahimi, Azeddine
    Essassi, El Mokhtar
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1247
  • [30] Cu(II)-bis(benzoylacetonate) complexes as potential inhibitors for tubulin polymerization: synthesis, crystal structure, spectral characterization, HSA, DFT, molecular docking studies, and antioxidant activity
    Guerraoui, Abdenour
    Goudjil, Meriem
    Djedouani, Amel
    Direm, Amani
    Boussaa, Abdelhalim
    Hannachi, Douniazed
    Fantechi, Elvira
    Ruani, Giampiero
    Boumaza, Abdecharif
    STRUCTURAL CHEMISTRY, 2025, 36 (01) : 125 - 150