Comprehensive Genome-Wide Investigation and Transcriptional Regulation of the DHHC Gene Family in Cotton Seed and Fiber Development

被引:0
|
作者
Silaiyiman, Saimire [1 ,2 ,3 ]
Zheng, Qinyue [1 ]
Wang, Yutao [2 ,3 ]
Ouyang, Lejun [1 ,2 ]
Guo, Zhishan [1 ]
Yu, Jieli [1 ]
Chen, Rong [1 ]
Peng, Rui [1 ]
Shen, Chao [1 ]
机构
[1] Guangdong Univ Petrochem Technol, Coll Biol & Food Engn, Maoming 525000, Peoples R China
[2] Kashi Univ, Coll Life & Geog Sci, Kashi 844000, Peoples R China
[3] Key Lab Biol Resources & Ecol Pamirs Plateau Xinji, Kashi 844000, Peoples R China
来源
AGRONOMY-BASEL | 2024年 / 14卷 / 06期
基金
中国国家自然科学基金;
关键词
DHHC gene family; functional characterization; transcriptional regulation; cotton; PROTEIN; PALMITOYLATION; EXPRESSION; ALIGNMENT; YIELD;
D O I
10.3390/agronomy14061214
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Protein palmitoylation, the most common and the only reversible post-translational lipid modification following protein translation, plays a pivotal role in the biochemical and physiological processes of both animals and plants. DHHC proteins, enriched with DHHC (Asp-His-His-Cys) domains, serve as catalyst for protein palmitoylation. However, research on DHHC in cotton remains scarce. This study conducted a systematic characterization and bioinformatics analysis on G. arboreum, G. raimondii, G. hirsutum, and G. barbadense, detecting 38, 37, 74, and 74 DHHC genes, respectively. Phylogenetic analysis categorized the DHHC gene family into six subgroups, consistent with previous evolutionary studies in Arabidopsis and rice. A further examination of protein structure revealed a correlation between genetic relatedness, structural similarity, and functional identity. Cis-element analysis identified elements predominantly associated with light response, stress, growth and development, and plant hormones. The integration of cotton seed development transcriptome, tissue expression pattern analysis, and population transcriptome data collectively suggests that Ghir_A05G027650 and Ghir_D05G027670 are promising candidate genes influencing seed development in upland cotton. Conversely, Gbar_A04G010750 and Gbar_A12G020520 emerge as potential candidates affecting both seed and fiber development in sea island cotton. These findings lay down a theoretical foundation for delving into the functional diversity of DHHC genes in cotton, thereby paving the way for the development of new breeding strategies and the optimization of cotton seed and fiber production, ultimately contributing to improved crop yield and quality.
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页数:16
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