Noncanonical Amino Acids in Biocatalysis

被引:31
作者
Birch-Price, Zachary [1 ]
Hardy, Florence J. [1 ]
Lister, Thomas M. [1 ]
Kohn, Anna R. [1 ]
Green, Anthony P. [1 ]
机构
[1] Univ Manchester, Manchester Inst Biotechnol, Sch Chem, Manchester M1 7DN, England
基金
英国工程与自然科学研究理事会; 欧洲研究理事会; 英国生物技术与生命科学研究理事会;
关键词
TRANSFER-RNA SYNTHETASE; SITE-SPECIFIC INCORPORATION; NUCLEAR-MAGNETIC-RESONANCE; PHOTO-CROSS-LINKING; IN-VIVO INCORPORATION; COLI RIBONUCLEOTIDE REDUCTASE; RADICAL PROPAGATION PATHWAY; ELECTRON-TRANSFER REACTIONS; PROXIMAL HEME LIGAND; ANTARCTICA LIPASE-B;
D O I
10.1021/acs.chemrev.4c00120
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In recent years, powerful genetic code reprogramming methods have emerged that allow new functional components to be embedded into proteins as noncanonical amino acid (ncAA) side chains. In this review, we will illustrate how the availability of an expanded set of amino acid building blocks has opened a wealth of new opportunities in enzymology and biocatalysis research. Genetic code reprogramming has provided new insights into enzyme mechanisms by allowing introduction of new spectroscopic probes and the targeted replacement of individual atoms or functional groups. NcAAs have also been used to develop engineered biocatalysts with improved activity, selectivity, and stability, as well as enzymes with artificial regulatory elements that are responsive to external stimuli. Perhaps most ambitiously, the combination of genetic code reprogramming and laboratory evolution has given rise to new classes of enzymes that use ncAAs as key catalytic elements. With the framework for developing ncAA-containing biocatalysts now firmly established, we are optimistic that genetic code reprogramming will become a progressively more powerful tool in the armory of enzyme designers and engineers in the coming years.
引用
收藏
页码:8740 / 8786
页数:47
相关论文
共 542 条
[111]   Adding α,α-disubstituted and β-linked monomers to the genetic code of an organism [J].
Dunkelmann, Daniel L. ;
Piedrafita, Carlos ;
Dickson, Alexandre ;
Liu, Kim C. ;
Elliott, Thomas S. ;
Fiedler, Marc ;
Bellini, Dom ;
Zhou, Andrew ;
Cervettini, Daniele ;
Chin, Jason W. .
NATURE, 2024, 625 (7995) :603-610
[112]   Inhibiting HIV-1 entry: Discovery of D-peptide inhibitors that target the gp41 coiled-coil pocket [J].
Eckert, DM ;
Malashkevich, VN ;
Hong, LH ;
Carr, PA ;
Kim, PS .
CELL, 1999, 99 (01) :103-115
[113]   Light-Activated Cre Recombinase as a Tool for the Spatial and Temporal Control of Gene Function in Mammalian Cells [J].
Edwards, Wesleigh F. ;
Young, Douglas D. ;
Deiters, Alexander .
ACS CHEMICAL BIOLOGY, 2009, 4 (06) :441-445
[114]   Probing Ligand Binding Sites on Large Proteins by Nuclear Magnetic Resonance Spectroscopy of Genetically Encoded Non-Canonical Amino Acids [J].
Ekanayake, Kasuni B. ;
Mahawaththa, Mithun C. ;
Qianzhu, Haocheng ;
Abdelkader, Elwy H. ;
George, Josemon ;
Ullrich, Sven ;
Murphy, Rhys B. ;
Fry, Sarah E. ;
Johansen-Leete, Jason ;
Payne, Richard J. ;
Nitsche, Christoph ;
Huber, Thomas ;
Otting, Gottfried .
JOURNAL OF MEDICINAL CHEMISTRY, 2023, 66 (07) :5289-5304
[115]   Molecular architecture and ligand recognition determinants for T4 RNA ligase [J].
El Omari, K ;
Ren, J ;
Bird, LE ;
Bona, MK ;
Klarmann, G ;
LeGrice, SFJ ;
Stammers, DK .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (03) :1573-1579
[116]   Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase [J].
Ellis-Guardiola, Ken ;
Rui, Huan ;
Beckner, Ryan L. ;
Srivastava, Poonam ;
Sukumar, Narayanasami ;
Roux, Benoit ;
Lewis, Jared C. .
BIOCHEMISTRY, 2019, 58 (12) :1616-1626
[117]   SITE-SPECIFIC ISOTOPIC LABELING OF PROTEINS FOR NMR-STUDIES [J].
ELLMAN, JA ;
VOLKMAN, BF ;
MENDEL, D ;
SCHULTZ, PG ;
WEMMER, DE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (20) :7959-7961
[118]   Decreased synthesis of ribosomal proteins in tauopathy revealed by non-canonical amino acid labelling [J].
Evans, Harrison Tudor ;
Benetatos, Joseph ;
van Roijen, Marloes ;
Bodea, Liviu-Gabriel ;
Goetz, Juergen .
EMBO JOURNAL, 2019, 38 (13)
[119]   Selective cysteine-to-selenocysteine changes in a [NiFe]-hydrogenase confirm a special position for catalysis and oxygen tolerance [J].
Evans, Rhiannon M. ;
Krahn, Natalie ;
Murphy, Bonnie J. ;
Lee, Harrison ;
Armstrong, Fraser A. ;
Soll, Dieter .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (13)
[120]   Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins [J].
Fafarman, Aaron T. ;
Webb, Lauren J. ;
Chuang, Jessica I. ;
Boxer, Steven G. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (41) :13356-13357