Investigation on the Interaction between Plexin Intracellular Plus Transmembrane Domains with GTPases and with the Lipid Bilayer using All-Atom Molecular Dynamics Simulations

被引：1
|
作者：
Zhang, Liqun [1 ]
Matthias, Buck [1 ]
机构：
[1] Case Western Reserve Univ, Physiol & Biophys, Cleveland, OH 44106 USA
来源：
BIOPHYSICAL JOURNAL | 2015年 / 108卷 / 02期
关键词：
D O I：
10.1016/j.bpj.2014.11.2739
中图分类号：
Q6 [生物物理学];
学科分类号：
071011 ;
摘要：
2526-Plat
引用
收藏
页码：500A / 500A
页数：1
相关论文
共 50 条
  • [1] Exploring the Structure and Dynamics of All-Atom Models for the Plexin Transmembrane Receptor Bound to GTPases and to Lipid Bilayer
    Zhang, Liqun
    Buck, Matthias
    BIOPHYSICAL JOURNAL, 2014, 106 (02) : 308A - 309A
  • [2] Modeling of transmembrane proteins and peptides: All-atom and coarse grain molecular dynamics simulations of helical bundles in palmitoyloleoylphosphatidylcholine (POPC) lipid bilayer
    Liu, Zhiwei
    Thuy Hien Nguyen
    Galan, Jhenny
    DeVane, Russell
    Moore, Preston B.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 238
  • [3] All-Atom Molecular Dynamics Elucidating Molecular Mechanisms of Single-Transmembrane Model Peptide Dimerization in a Lipid Bilayer
    Itaya, Hayato
    Kasahara, Kota
    Xie, Qilin
    Yano, Yoshiaki
    Matsuzaki, Katsumi
    Takahashi, Takuya
    ACS OMEGA, 2021, 6 (17): : 11458 - 11465
  • [4] Effects of Lipid Composition on Bilayer Membranes Quantified by All-Atom Molecular Dynamics
    Ding, Wei
    Palaiokostas, Michail
    Wang, Wen
    Orsi, Mario
    JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (49): : 15263 - 15274
  • [5] All-Atom Molecular Dynamics Simulations of Communication Between Nanochannel Arrays
    Manikandan, D.
    Nayak, Pramoda K. K.
    ACS APPLIED NANO MATERIALS, 2023, 6 (13) : 11640 - 11650
  • [6] All-atom molecular dynamics simulations of Synaptotagmin-SNARE-complexin complexes bridging a vesicle and a flat lipid bilayer
    Rizo, Josep
    Sari, Levent
    Qi, Yife
    Im, Wonpil
    Lin, Milo M.
    ELIFE, 2022, 11
  • [7] Predicting and interpreting EPR spectra of POPC lipid bilayers with transmembrane α-helical peptides from all-atom molecular dynamics simulations
    Catte, Andrea
    Oganesyan, Vasily S.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2025, 27 (09) : 4775 - 4784
  • [8] All-atom molecular dynamics simulations of an artificial sodium channel in a lipid bilayer: the effect of water solvation/desolvation of the sodium ion
    Skelton, A. A.
    Khedkar, V. M.
    Fried, J. R.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2016, 34 (03): : 529 - 539
  • [9] Dynamics of Protein-RNA Interfaces Using All-Atom Molecular Dynamics Simulations
    Sabei, Afra
    Hognon, Cecilia
    Martin, Juliette
    Frezza, Elisa
    JOURNAL OF PHYSICAL CHEMISTRY B, 2024, 128 (20): : 4865 - 4886
  • [10] Study of the behavior of triacylglycerols in membrane bilayers and the formation of lipid droplets using all-atom molecular dynamics simulations
    Gee, Stephen E.
    Im, Wonpil
    BIOPHYSICAL JOURNAL, 2022, 121 (03) : 69 - 69
12345