High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector

被引:2
|
作者
Chan, Lieza M. [1 ]
Courteau, Brandon J. [1 ]
Maker, Allison [1 ]
Wu, Mengyu [3 ,5 ]
Basanta, Benjamin [3 ,6 ]
Mehmood, Hev [1 ]
Bulkley, David [2 ]
Joyce, David [4 ]
Lee, Brian C. [4 ]
Mick, Stephen [4 ]
Czarnik, Cory [4 ]
Gulati, Sahil [4 ]
Lander, Gabriel C. [3 ]
Verba, Kliment A. [1 ]
机构
[1] Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA
[2] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94158 USA
[3] Scripps Res, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[4] Gatan Inc, Pleasanton, CA USA
[5] Neomorph, San Diego, CA USA
[6] Arzeda, Seattle, WA USA
关键词
Single -particle cryo-EM; Direct detectors; Advances in microscope hardware; 100 keV imaging; Gatan Alpine; LKB1; complex; BEAM-INDUCED MOTION; CRYO-EM; RADIATION-DAMAGE; MICROSCOPY; VISUALIZATION; LIMITATIONS; VALIDATION; CONTRAST; TOOLS;
D O I
10.1016/j.jsb.2024.108108
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Developments in direct electron detector technology have played a pivotal role in enabling high-resolution structural studies by cryo-EM at 200 and 300 keV. Yet, theory and recent experiments indicate advantages to imaging at 100 keV, energies for which the current detectors have not been optimized. In this study, we evaluated the Gatan Alpine detector, designed for operation at 100 and 200 keV. Compared to the Gatan K3, Alpine demonstrated a significant DQE improvement at these energies, specifically a- 4-fold improvement at Nyquist at 100 keV. In single-particle cryo-EM experiments, Alpine datasets yielded better than 2 & Aring; resolution reconstructions of apoferritin at 120 and 200 keV on a ThermoFisher Scientific (TFS) Glacios microscope fitted with a non-standard SP-Twin lens. We also achieved a- 3.2 & Aring; resolution reconstruction of a 115 kDa asymmetric protein complex, proving Alpine 's effectiveness with complex biological samples. In-depth analysis revealed that Alpine reconstructions are comparable to K3 reconstructions at 200 keV, and remarkably, reconstruction from Alpine at 120 keV on a TFS Glacios surpassed all but the 300 keV data from a TFS Titan Krios with GIF/K3. Additionally, we show Alpine 's capability for high-resolution data acquisition and screening on lower-end systems by obtaining- 3 & Aring; resolution reconstructions of apoferritin and aldolase at 100 keV and detailed 2D averages of a 55 kDa sample using a side-entry cryo holder. Overall, we show that Gatan Alpine performs well with the standard 200 keV imaging systems and may potentially capture the benefits of lower accelerating voltages, bringing smaller sized particles within the scope of cryo-EM.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Expected resolution limits of x-ray free-electron laser single-particle imaging for realistic source and detector properties
    Juncheng, E.
    Kim, Y.
    Bielecki, J.
    Sikorski, M.
    De Wijn, R.
    Fortmann-Grote, C.
    Sztuk-Dambietz, J.
    Koliyadu, J.C.P.
    Letrun, R.
    Kirkwood, H.J.
    Sato, T.
    Bean, R.
    Mancuso, A.P.
    Kim, C.
    Structural Dynamics, 2022, 9 (06)
  • [22] Graphene-oxide as a substrate for high-resolution single-particle cryo-EM.
    Palovcak, E.
    Wang, F.
    Bulkley, D.
    Zheng, S.
    Agard, D. A.
    Cheng, Y.
    MOLECULAR BIOLOGY OF THE CELL, 2017, 28
  • [23] Expected resolution limits of x-ray free-electron laser single-particle imaging for realistic source and detector properties
    Juncheng, E.
    Kim, Y.
    Bielecki, J.
    Sikorski, M.
    de Wijn, R.
    Fortmann-Grote, C.
    Sztuk-Dambietz, J.
    Koliyadu, J. C. P.
    Letrun, R.
    Kirkwood, H. J.
    Sato, T.
    Bean, R.
    Mancuso, A. P.
    Kim, C.
    STRUCTURAL DYNAMICS-US, 2022, 9 (06):
  • [24] High-resolution single-particle cryo-EM of samples vitrified in boiling nitrogen
    Engstrom, Tyler
    Clinger, Jonathan A.
    Spoth, Katherine A.
    Clarke, Oliver B.
    Closs, David S.
    Jayne, Richard
    Apker, Benjamin A.
    Thorne, Robert E.
    IUCRJ, 2021, 8 : 867 - 877
  • [25] High-Resolution Structure Determination At 100kv Enabled by New Falcon-C Direct Electron Detector
    Koh, Adrian
    Yang, Wen
    Karia, Dimple
    Yu, Lingbo
    Lengyel, Jeffrey
    Kotecha, Abhay
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2023, 79 : A140 - A140
  • [26] DIRECT IMAGING OF AN ADSORBED LAYER BY HIGH-RESOLUTION ELECTRON-MICROSCOPY
    JEFFERSON, DA
    HARRIS, PJF
    NATURE, 1988, 332 (6165) : 617 - 620
  • [27] HIGH-RESOLUTION TOPOGRAPHICAL IMAGING BY DIRECT TRANSMISSION ELECTRON-MICROSCOPY
    CULLIS, AG
    MAHER, DM
    PHILOSOPHICAL MAGAZINE, 1974, 30 (02): : 447 - 451
  • [28] HIGH-RESOLUTION AUGER-SPECTRA OF BORON EXCITED IN 200 KEV B+ SINGLE COLLISIONS
    RODBRO, M
    BRUCH, R
    BISGAARD, P
    DAHL, P
    FASTRUP, B
    JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS, 1977, 10 (13) : L483 - L487
  • [29] Collection, pre-processing and on-the-fly analysis of data for high-resolution, single-particle cryo-electron microscopy
    Thompson, Rebecca F.
    Iadanza, Matthew G.
    Hesketh, Emma L.
    Rawson, Shaun
    Ranson, Neil A.
    NATURE PROTOCOLS, 2019, 14 (01) : 100 - +
  • [30] Collection, pre-processing and on-the-fly analysis of data for high-resolution, single-particle cryo-electron microscopy
    Rebecca F. Thompson
    Matthew G. Iadanza
    Emma L. Hesketh
    Shaun Rawson
    Neil A. Ranson
    Nature Protocols, 2019, 14 : 100 - 118