Competition between Self-Assembly and Phase Separation Governs High-Temperature Condensation of a DNA Liquid

被引:2
作者
Hegde, Omkar [1 ]
Li, Tianhao [2 ]
Sharma, Anjali [1 ]
Borja, Marco [1 ]
Jacobs, William M. [2 ]
Rogers, W. Benjamin [1 ]
机构
[1] Brandeis Univ, Martin A Fisher Sch Phys, Waltham, MA 02453 USA
[2] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
基金
美国国家科学基金会;
关键词
ASSOCIATION; TRANSITIONS; REVEALS; DESIGN; STATE;
D O I
10.1103/PhysRevLett.132.208401
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
In many biopolymer solutions, attractive interactions that stabilize finite-sized clusters at low concentrations also promote phase separation at high concentrations. Here we study a model biopolymer system that exhibits the opposite behavior, whereby self-assembly of DNA oligonucleotides into finitesized, stoichiometric clusters tends to inhibit phase separation. We first use microfluidics-based experiments to map a novel phase transition in which the oligonucleotides condense as the temperature increases at high concentrations of divalent cations. We then show that a theoretical model of competition between self-assembly and phase separation quantitatively predicts changes in experimental phase diagrams arising from DNA sequence perturbations. Our results point to a general mechanism by which self-assembly shapes phase boundaries in complex biopolymer solutions.
引用
收藏
页数:6
相关论文
共 54 条
[1]   Size invariant circle detection [J].
Atherton, TJ ;
Kerbyson, DJ .
IMAGE AND VISION COMPUTING, 1999, 17 (11) :795-803
[2]   Controlling composition of coexisting phases via molecular transitions [J].
Bartolucci, Giacomo ;
Adame-Arana, Omar ;
Zhao, Xueping ;
Weber, Christoph A. .
BIOPHYSICAL JOURNAL, 2021, 120 (21) :4682-4697
[3]   Chemical Kinetics and Mass Action in Coexisting Phases [J].
Bauermann, Jonathan ;
Laha, Sudarshana ;
McCall, Patrick M. ;
Juelicher, Frank ;
Weber, Christoph A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2022, 144 (42) :19294-19304
[4]   Phase behavior and critical activated dynamics of limited-valence DNA nanostars [J].
Biffi, Silvia ;
Cerbino, Roberto ;
Bomboi, Francesca ;
Paraboschi, Elvezia Maria ;
Asselta, Rosanna ;
Sciortino, Francesco ;
Bellini, Tommaso .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (39) :15633-15637
[5]   EQUILIBRIUM DIALYSIS STUDIES OF POLYAMINE BINDING TO DNA [J].
BRAUNLIN, WH ;
STRICK, TJ ;
RECORD, MT .
BIOPOLYMERS, 1982, 21 (07) :1301-1314
[6]   SAFT - EQUATION-OF-STATE SOLUTION MODEL FOR ASSOCIATING FLUIDS [J].
CHAPMAN, WG ;
GUBBINS, KE ;
JACKSON, G ;
RADOSZ, M .
FLUID PHASE EQUILIBRIA, 1989, 52 :31-38
[7]   The persistence length and length per base of single-stranded DNA obtained from fluorescence correlation spectroscopy measurements using mean field theory [J].
Chi, Qingjia ;
Wang, Guixue ;
Jiang, Jiahuan .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2013, 392 (05) :1072-1079
[8]   Emulsion imaging of a DNA nanostar condensate phase diagram reveals valence and electrostatic effects [J].
Conrad, Nathaniel ;
Chang, Grace ;
Fygenson, Deborah K. ;
Saleh, Omar A. .
JOURNAL OF CHEMICAL PHYSICS, 2022, 157 (23)
[9]   A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed [J].
Fornace, Mark E. ;
Porubsky, Nicholas J. ;
Pierce, Niles A. .
ACS SYNTHETIC BIOLOGY, 2020, 9 (10) :2665-2678
[10]   RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation [J].
Guillen-Boixet, Jordina ;
Kopach, Andrii ;
Holehouse, Alex S. ;
Wittmann, Sina ;
Jahnel, Marcus ;
Schluessler, Raimund ;
Kim, Kyoohyun ;
Trussina, Irmela R. E. A. ;
Wang, Jie ;
Mateju, Daniel ;
Poser, Ina ;
Maharana, Shovamayee ;
Ruer-Gruss, Martine ;
Richter, Doris ;
Zhang, Xiaojie ;
Chang, Young-Tae ;
Guck, Jochen ;
Honigmann, Alf ;
Mahamid, Julia ;
Hyman, Anthony A. ;
Pappu, Rohit V. ;
Alberti, Simon ;
Franzmann, Titus M. .
CELL, 2020, 181 (02) :346-+