Draft genome announcement of Bacillus velezensis TSB6.1 isolated as a culturable endosymbiont of a nitrogen-fixing endophytic yeast Rhodotorula mucilaginosa JGTA-S1

被引:1
作者
Nag, Mayurakshi [1 ,2 ]
Seal, Anindita [1 ,2 ]
机构
[1] Univ Calcutta, Dept Biotechnol, Kolkata, West Bengal, India
[2] Univ Calcutta, Dr BC Guha Ctr Genet Engn & Biotechnol, Kolkata, West Bengal, India
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 07期
关键词
Rhodotorula mucilaginosa JGTA-S1; endosymbiont; Bacillus velezensis;
D O I
10.1128/mra.01202-23
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We here report the genome of Bacillus velezensis TSB6.1 isolated as a culturable endosymbiont of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1. TSB6.1 has a genome size of approximately 4.50 Mb, with 4,597 genes, 45.54% GC content, 3 rRNAs, and 73 tRNAs.
引用
收藏
页数:3
相关论文
共 8 条
[1]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91
[2]   Uncovering the hidden bacterial ghost communities of yeast and experimental evidences demonstrates yeast as thriving hub for bacteria [J].
Indu, B. ;
Keertana, Tallapragada ;
Ipsita, Sahu ;
Jagadeeshwari, Uppada ;
Sasikala, Chintalapati ;
Ramana, Chintalapati Venkata .
SCIENTIFIC REPORTS, 2021, 11 (01)
[3]   CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].
Parks, Donovan H. ;
Imelfort, Michael ;
Skennerton, Connor T. ;
Hugenholtz, Philip ;
Tyson, Gene W. .
GENOME RESEARCH, 2015, 25 (07) :1043-1055
[4]   A Tripartite Interaction among the Basidiomycete Rhodotorula mucilaginosa, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition [J].
Paul, Karnelia ;
Saha, Chinmay ;
Nag, Mayurakshi ;
Mandal, Drishti ;
Naiya, Haraprasad ;
Sen, Diya ;
Mitra, Souvik ;
Kumar, Mohit ;
Bose, Dipayan ;
Mukherjee, Gairik ;
Naskar, Nabanita ;
Lahiri, Susanta ;
Das Ghosh, Upal ;
Tripathi, Sudipta ;
Sarkar, Mousumi Poddar ;
Banerjee, Manidipa ;
Kleinert, Aleysia ;
Valentine, Alexander J. ;
Tripathy, Sucheta ;
Sinharoy, Senjuti ;
Seal, Anindita .
PLANT CELL, 2020, 32 (02) :486-507
[5]   AdapterRemoval v2: Rapid adapter trimming, identification, and read merging [J].
Schubert M. ;
Lindgreen S. ;
Orlando L. .
BMC Research Notes, 9 (1)
[6]   MEGA11 Molecular Evolutionary Genetics Analysis Version 11 [J].
Tamura, Koichiro ;
Stecher, Glen ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (07) :3022-3027
[7]   NCBI prokaryotic genome annotation pipeline [J].
Tatusova, Tatiana ;
DiCuccio, Michael ;
Badretdin, Azat ;
Chetvernin, Vyacheslav ;
Nawrocki, Eric P. ;
Zaslavsky, Leonid ;
Lomsadze, Alexandre ;
Pruitt, Kimd. ;
Borodovsky, Mark ;
Ostell, James .
NUCLEIC ACIDS RESEARCH, 2016, 44 (14) :6614-6624
[8]   Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads [J].
Wick, Ryan R. ;
Judd, Louise M. ;
Gorrie, Claire L. ;
Holt, Kathryn E. .
PLOS COMPUTATIONAL BIOLOGY, 2017, 13 (06)