The reactivation kinetic analysis, molecular docking, and dynamics of oximes against three V-type nerve agents inhibited four human cholinesterases

被引:1
|
作者
Li, Kexin [1 ]
Liu, Yulong [1 ]
Liu, Yanqin [1 ]
Li, Qian [2 ]
Guo, Lei [1 ]
Xie, Jianwei [1 ]
机构
[1] Acad Mil Med Sci, Inst Pharmacol & Toxicol, Lab Toxicant Anal, 27 Taiping Rd, Beijing 100850, Peoples R China
[2] Beijing Inst Pharmacol & Toxicol, 27 Taiping Rd, Beijing 100850, Peoples R China
关键词
V-type nerve agents; Acetylcholinesterase; Butyrylcholinesterase; Recombinant; Reactivation kinetics; Molecular dynamics; ORGANOPHOSPHORUS COMPOUNDS; AGING KINETICS; ACETYLCHOLINESTERASE; BUTYRYLCHOLINESTERASE; ACHE; PARAMETERS; MONKEY; MMB-4; SWINE; SITE;
D O I
10.1016/j.cbi.2024.111061
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nerve agents pose significant threats to civilian and military populations. The reactivation of acetylcholinesterase (AChE) is critical in treating acute poisoning, but there is still lacking broad-spectrum reactivators, which presents a big challenge. Therefore, insights gained from the reactivation kinetic analysis and molecular docking are essential for understanding the behavior of reactivators towards intoxicated AChE. In this research, we present a systematic determination of the reactivation kinetics of three V agents-inhibited four human ChEs [(AChE and butyrylcholinesterase (BChE)) from either native or recombinant resources, namely, red blood cell (RBC) AChE, rhAChE, hBChE, rhBChE) reactivated by five standard oximes. We unveiled the effect of native and recombinant ChEs on the reactivation kinetics of V agents ex vitro , where the reactivation kinetics characteristic of Vs-inhibited BChE was reported for the first time. In terms of the inhibition type, all of the five oxime reactivators exhibited noncompetitive inhibition. The inhibition potency of these reactivators would not lead to the difference in the reactivation kinetics between native and recombinant ChE. Despite the significant differences between the native and recombinant ChEs observed in the inhibition, aging, and spontaneous reactivation kinetics, the reactivation kinetics of V agentinhibited ChEs by oximes were less differentiated, which were supported by the ligand docking results. We also found differences in the reactivation efficiency between five reactivators and the phosphorylated enzyme, and molecular dynamic simulations can further explain from the perspectives of conformational stability, hydrogen bonding, binding free energies, and amino acid contributions. By Poisson-Boltzmann surface area (MM-PBSA) calculations, the total binding free energy trends aligned well with the experimental k r2 values.
引用
收藏
页数:11
相关论文
共 4 条
  • [1] The kinetic and molecular docking analysis of interactions between three V-type nerve agents and four human cholinesterases
    Li, Kexin
    Liu, Yulong
    Liu, Yanqin
    Li, Qian
    Guo, Lei
    Xie, Jianwei
    CHEMICO-BIOLOGICAL INTERACTIONS, 2023, 372
  • [2] Molecular dynamics simulations of organophosphorus acid anhydrase interactions with V-type organophosphate nerve agents
    Phillips, Joshua L.
    Harvey, Steven P.
    Gnanakaran, Sandrasegaram
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2014, 247
  • [3] Basic computational analysis and molecular conformational prediction of quaternary and neutral oximes with potential activity for reactivation of nerve agent-inhibited human acetylcholinesterase
    da Silva, Jorge Alberto Valle
    Costa, Lucas Modesto
    Koning, Martijn
    Franca, Tanos Celmar Costa
    Junior, Itamar
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [4] Identification of hits as anti-obesity agents against human pancreatic lipase via docking, drug-likeness, in-silico ADME(T), pharmacophore, DFT, molecular dynamics, and MM/PB(GB)SA analysis
    Choudhari, Sujata
    Patil, Sachin Kumar
    Rathod, Sanket
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (20): : 10688 - 10710