Bovine carbonic anhydrase (bCA) inhibitors: Synthesis, molecular docking and theoretical studies of bisoxadiazole-substituted sulfonamide derivatives

被引:3
|
作者
Eybek, Abdulbaki [1 ]
Kaya, Mustafa Oguzhan [2 ,3 ,8 ]
Gulec, Ozcan [4 ]
Demirci, Tuna [5 ]
Musatat, Ahmad Badreddin [4 ]
Ozdemir, Oguzhan [6 ]
Oner, Mine Nazan Kerimak [7 ]
Kaya, Yesim [3 ]
Arslan, Mustafa [4 ]
机构
[1] Siirt Univ, Fac Arts & Sci, Chem, TR-56100 Siirt, Turkiye
[2] Siirt Univ, Fac Vet, Basic Sci, TR-56100 Siirt, Turkiye
[3] Kocaeli Univ, Fac Arts & Sci, Chem, TR-41001 Kocaeli, Turkiye
[4] Sakarya Univ, Fac Sci, Chem, TR-54050 Sakarya, Turkiye
[5] Duzce Univ, Sci & Technol Res Lab, TR-81620 Duzce, Turkiye
[6] Batman Univ, Tech Sci Vocat Sch, Vet Sci Dept, TR-72000 Batman, Turkiye
[7] Kocaeli Univ, Izmit Vocat Sch, Med & Aromat Plants Program, TR-41285 Kocaeli, Turkiye
[8] Kocaeli Univ, Fac Arts & Sci, Dept Chem Biochem, Biochem Sect, Izmit, Kocaeli, Turkiye
关键词
Bisoxadiazole; Sulfonamide; Bovine carbonic anhydrase (bCA); DFT; Molecular docking; BASIS-SETS; ENZYME; OSTEOPETROSIS; DESIGN; STATE;
D O I
10.1016/j.ijbiomac.2024.131489
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
This paper describes the in vitro inhibition potential of bisoxadiazole-substituted sulfonamide derivatives (6a-t) against bovine carbonic anhydrase (bCA) after they were designed through computational analyses and evaluated the predicted interaction via molecular docking. First, in silico ADMET predictions and physicochemical property analysis of the compounds provided insights into solubility and permeability, then density functional theory (DFT) calculations were performed to analyse their ionization energies, nucleophilicity, in vitro electron affinity, dipole moments and molecular interactions under vacuum and dimethyl sulfoxide (DMSO) conditions. After calculating the theoretical inhibition constants, IC50 values determined from enzymatic inhibition were found between 12.93 and 45.77 mu M. Molecular docking evaluation revealed favorable hydrogen bonding and pi-interactions of the compounds within the bCA active site. The experimentally most active compound, 6p, exhibited the strongest inhibitory activity with a theoretical inhibition constant value of 9.41 nM and H-bonds with Gln91, Thr198, and Trp4 residues and His63 Pi-cation interactions with His63 residues. Overall, the study reveals promising bCA blocking potential for the synthesized derivatives, similar to acetazolamide.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Synthesis of coumarin-sulfonamide derivatives and determination of their cytotoxicity, carbonic anhydrase inhibitory and molecular docking studies
    Kurt, Belma Zengin
    Sonmez, Fatih
    Ozturk, Dilek
    Akdemir, Atilla
    Angeli, Andrea
    Supuran, Claudiu T.
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2019, 183
  • [2] Carbonic anhydrase inhibitors: Design, synthesis, kinetic, docking and molecular dynamics analysis of novel glycine and phenylalanine sulfonamide derivatives
    Fidan, Ismail
    Salmas, Ramin Ekhteiari
    Arslan, Mehmet
    Senturk, Murat
    Durdagi, Serdar
    Ekinci, Deniz
    Senturk, Esra
    Cosgun, Sedat
    Supuran, Claudiu T.
    BIOORGANIC & MEDICINAL CHEMISTRY, 2015, 23 (23) : 7353 - 7358
  • [3] Novel carbohydrate-based sulfonamide derivatives as selective carbonic anhydrase II inhibitors: Synthesis, biological and molecular docking analysis
    Hou, Zhuang
    Cai, Qiang
    Cheng, Mao-sheng
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2021, 51
  • [4] Synthesis of carbazole bearing pyridopyrimidine-substituted sulfonamide derivatives and studies their carbonic anhydrase enzyme activity
    Rifati-Nixha, Arleta
    Arslan, Mustafa
    Gencer, Nahit
    Cikrikici, Kubra
    Gokce, Basak
    Arslan, Oktay
    JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY, 2019, 33 (06)
  • [5] Synthesis and characterization of novel dioxoacridine sulfonamide derivatives as new carbonic anhydrase inhibitors
    Kaya, Muharrem
    Basar, Erhan
    Cakir, Emrah
    Tunca, Ekrem
    Bulbul, Metin
    JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, 2012, 27 (04) : 509 - 514
  • [6] Synthesis, molecular docking analysis and carbonic anhydrase I-II inhibitory evaluation of new sulfonamide derivatives
    Saglik, Begum Nurpelin
    Cevik, Ulviye Acar
    Osmaniye, Derya
    Levent, Serkan
    Cavusoglu, Betul Kaya
    Demir, Yeliz
    Ilgin, Sinem
    Ozkay, Yusuf
    Koparal, Ali Savas
    Beydemir, Sukru
    Kaplancikli, Zafer Asim
    BIOORGANIC CHEMISTRY, 2019, 91
  • [7] Coumarin or benzoxazinone based novel carbonic anhydrase inhibitors: synthesis, molecular docking and anticonvulsant studies
    Karatas, Mert Olgun
    Uslu, Harun
    Sari, Suat
    Alagoz, Mehmet Abdullah
    Karakurt, Arzu
    Alici, Bulent
    Bilen, Cigdem
    Yavuz, Emre
    Gencer, Nahit
    Arslan, Oktay
    JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, 2016, 31 (05) : 760 - 772
  • [8] Docking studies and molecular dynamics simulation of triazole benzene sulfonamide derivatives with human carbonic anhydrase IX inhibition activity
    P., Gopinath
    M. K., Kathiravan
    RSC ADVANCES, 2021, 11 (60) : 38079 - 38093
  • [9] Design, synthesis and molecular modelling studies of some pyrazole derivatives as carbonic anhydrase inhibitors
    Dizdaroglu, Yazgi
    Albay, Canan
    Arslan, Tayfun
    Ece, Abdulilah
    Turkoglu, Emir A.
    Efe, Asiye
    Senturk, Murat
    Supuran, Claudiu T.
    Ekinci, Deniz
    JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, 2020, 35 (01) : 289 - 297
  • [10] Synthesis, biological evaluation and molecular docking of novel pyrazole derivatives as potent carbonic anhydrase and acetylcholinesterase inhibitors
    Turkan, Fikret
    Cetin, Adnan
    Taslimi, Parham
    Karaman, Muhammet
    Gulcin, Ilhami
    BIOORGANIC CHEMISTRY, 2019, 86 : 420 - 427