Federated Cross Learning for Medical Image Segmentation

被引:0
作者
Xu, Xuanang [1 ,2 ]
Deng, Hannah H. [3 ]
Chen, Tianyi [4 ]
Kuang, Tianshu [3 ]
Barber, Joshua C. [3 ]
Kim, Daeseung [3 ]
Gateno, Jaime [3 ,5 ]
Xia, James J. [3 ,5 ]
Yan, Pingkun [1 ,2 ]
机构
[1] Rensselaer Polytech Inst, Dept Biomed Engn, 110 8th St, Troy, NY 12180 USA
[2] Rensselaer Polytech Inst, Ctr Biotechnol & Interdiscipli, 110 8th St, Troy, NY 12180 USA
[3] Houston Methodist Res Inst, Dept Oral & Maxillofacial Surg, 6560 Fannin St, Houston, TX 77030 USA
[4] Rensselaer Polytech Inst, Dept Elect Comp & Syst Engn, 110 8th St, Troy, NY 12180 USA
[5] Cornell Univ, Weill Med Coll, Dept Surg Oral & Maxillofacial Surg, 407 E 61st St, New York, NY 10065 USA
来源
MEDICAL IMAGING WITH DEEP LEARNING, VOL 227 | 2023年 / 227卷
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
Federated learning; non-iid data; medical image segmentation; ensemble mechanism; PROSTATE SEGMENTATION; MRI;
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Federated learning (FL) can collaboratively train deep learning models using isolated patient data owned by different hospitals for various clinical applications, including medical image segmentation. However, a major problem of FL is its performance degradation when dealing with data that are not independently and identically distributed (non-iid), which is often the case in medical images. In this paper, we first conduct a theoretical analysis on the FL algorithm to reveal the problem of model aggregation during training on non-iid data. With the insights gained through the analysis, we propose a simple yet effective method, federated cross learning (FedCross), to tackle this challenging problem. Unlike the conventional FL methods that combine multiple individually trained local models on a server node, our FedCross sequentially trains the global model across different clients in a round-robin manner, and thus the entire training procedure does not involve any model aggregation steps. To further improve its performance to be comparable with the centralized learning method, we combine the FedCross with an ensemble learning mechanism to compose a federated cross ensemble learning (FedCrossEns) method. Finally, we conduct extensive experiments using a set of public datasets. The experimental results show that the proposed FedCross training strategy outperforms the mainstream FL methods on non-iid data. In addition to improving the segmentation performance, our FedCrossEns can further provide a quantitative estimation of the model uncertainty, demonstrating the effectiveness and clinical significance of our designs. Source code is publicly available at https://github.com/DIAL- RPI/FedCross.
引用
收藏
页码:1441 / 1452
页数:12
相关论文
共 26 条
[1]  
Antonelli M, 2021, Arxiv, DOI arXiv:2106.05735
[2]   PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images [J].
Armato, Samuel G., II ;
Huisman, Henkjan ;
Drukker, Karen ;
Hadjiiski, Lubomir ;
Kirby, Justin S. ;
Petrick, Nicholas ;
Redmond, George ;
Giger, Maryellen L. ;
Cha, Kenny ;
Mamonov, Artem ;
Kalpathy-Cramer, Jayashree ;
Farahani, Keyvan .
JOURNAL OF MEDICAL IMAGING, 2018, 5 (04)
[3]   A deep learning-based framework for segmenting invisible clinical target volumes with estimated uncertainties for post-operative prostate cancer radiotherapy [J].
Balagopal, Anjali ;
Nguyen, Dan ;
Morgan, Howard ;
Weng, Yaochung ;
Dohopolski, Michael ;
Lin, Mu-Han ;
Barkousaraie, Azar Sadeghnejad ;
Gonzalez, Yesenia ;
Garant, Aurelie ;
Desai, Neil ;
Hannan, Raquibul ;
Jiang, Steve .
MEDICAL IMAGE ANALYSIS, 2021, 72
[4]   Multimodal Transformer for Accelerated MR Imaging [J].
Feng, Chun-Mei ;
Yan, Yunlu ;
Chen, Geng ;
Xu, Yong ;
Hu, Ying ;
Shao, Ling ;
Fu, Huazhu .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2023, 42 (10) :2804-2816
[5]  
Ioffe S, 2015, PR MACH LEARN RES, V37, P448
[6]   nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation [J].
Isensee, Fabian ;
Jaeger, Paul F. ;
Kohl, Simon A. A. ;
Petersen, Jens ;
Maier-Hein, Klaus H. .
NATURE METHODS, 2021, 18 (02) :203-+
[7]  
Li T., 2020, PROC MACH LEARN SYST, V2, P429, DOI DOI 10.48550/ARXIV.1812.06127
[8]   Privacy-Preserving Federated Brain Tumour Segmentation [J].
Li, Wenqi ;
Milletari, Fausto ;
Xu, Daguang ;
Rieke, Nicola ;
Hancox, Jonny ;
Zhu, Wentao ;
Baust, Maximilian ;
Cheng, Yan ;
Ourselin, Sebastien ;
Cardoso, M. Jorge ;
Feng, Andrew .
MACHINE LEARNING IN MEDICAL IMAGING (MLMI 2019), 2019, 11861 :133-141
[9]  
Li X, 2021, INT C LEARN REPR
[10]   Learning without Forgetting [J].
Li, Zhizhong ;
Hoiem, Derek .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2018, 40 (12) :2935-2947