Genetic Tools for Cell Lineage Tracing and Profiling Developmental Trajectories in the Skin

被引:1
作者
Nathans, Jenny F. [1 ,2 ]
Ayers, Jessica L. [3 ,4 ]
Shendure, Jay [2 ,5 ]
Simpson, Cory L. [4 ,5 ]
机构
[1] Univ Washington, Med Scientist Training Program, Seattle, WA USA
[2] Univ Washington, Dept Genome Sci, Seattle, WA USA
[3] Univ Washington, Dept Lab Med & Pathol, Mol Med & Mech Dis PhD Program, Seattle, WA USA
[4] Univ Washington, Dept Dermatol, 850 Republican St D254, Seattle, WA 98109 USA
[5] Univ Washington, Inst Stem Cell & Regenerat Med, Seattle, WA USA
基金
美国国家卫生研究院;
关键词
CRISPR; DNA barcoding; DNA typewriter; Genome editing; Prime editor; STEM-CELL; CLONAL DYNAMICS; GENOMIC DNA; EXPRESSION; TUMOR; DIFFERENTIATION; IDENTIFICATION; HETEROGENEITY; STRATEGIES; CAPACITY;
D O I
10.1016/j.jid.2024.02.006
中图分类号
R75 [皮肤病学与性病学];
学科分类号
100206 ;
摘要
The epidermis is the body's first line of protection against dehydration and pathogens, continually regenerating the outermost protective skin layers throughout life. During both embryonic development and wound healing, epidermal stem and progenitor cells must respond to external stimuli and insults to build, maintain, and repair the cutaneous barrier. Recent advances in CRISPR-based methods for cell lineage tracing have remarkably expanded the potential for experiments that track stem and progenitor cell proliferation and differentiation over the course of tissue and even organismal development. Additional tools for DNA -based recording of cellular signaling cues promise to deepen our understanding of the mechanisms driving normal skin morphogenesis and response to stressors as well as the dysregulation of cell proliferation and differentiation in skin diseases and cancer. In this review, we highlight cutting -edge methods for cell lineage tracing, including in organoids and model organisms, and explore how cutaneous biology researchers might leverage these techniques to elucidate the developmental programs that support the regenerative capacity and plasticity of the skin.
引用
收藏
页码:936 / 949
页数:14
相关论文
共 127 条
[31]   CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes [J].
Efremova, Mirjana ;
Vento-Tormo, Miquel ;
Teichmann, Sarah A. ;
Vento-Tormo, Roser .
NATURE PROTOCOLS, 2020, 15 (04) :1484-1506
[32]   Inhibition of PI3K by copanlisib exerts potent antitumor effects on Merkel cell carcinoma cell lines and mouse xenografts [J].
Fang, Bin ;
Kannan, Aarthi ;
Zhao, Stephanie ;
Nguyen, Quy H. ;
Ejadi, Samuel ;
Yamamoto, Maki ;
Barreto, J. Camilo ;
Zhao, Haibo ;
Gao, Ling .
SCIENTIFIC REPORTS, 2020, 10 (01)
[33]   Single-Nucleotide-Resolution Computing and Memory in Living Cells [J].
Farzadfard, Fahim ;
Gharaei, Nava ;
Higashikuni, Yasutomi ;
Jung, Giyoung ;
Cao, Jicong ;
Lu, Timothy K. .
MOLECULAR CELL, 2019, 75 (04) :769-+
[34]   Inferring and perturbing cell fate regulomes in human brain organoids [J].
Fleck, Jonas Simon ;
Jansen, Sophie Martina Johanna ;
Wollny, Damian ;
Zenk, Fides ;
Seimiya, Makiko ;
Jain, Akanksha ;
Okamoto, Ryoko ;
Santel, Malgorzata ;
He, Zhisong ;
Camp, J. Gray ;
Treutlein, Barbara .
NATURE, 2023, 621 (7978) :365-+
[35]   CRISPR-Cas9 Gene Editing for Sickle Cell Disease and β-Thalassemia [J].
Frangoul, H. ;
Altshuler, D. ;
Cappellini, M. D. ;
Chen, Y-S ;
Domm, J. ;
Eustace, B. K. ;
Foell, J. ;
de la Fuente, J. ;
Grupp, S. ;
Handgretinger, R. ;
Ho, T. W. ;
Kattamis, A. ;
Kernytsky, A. ;
Lekstrom-Himes, J. ;
Li, A. M. ;
Locatelli, F. ;
Mapara, M. Y. ;
de Montalembert, M. ;
Rondelli, D. ;
Sharma, A. ;
Sheth, S. ;
Soni, S. ;
Steinberg, M. H. ;
Wall, D. ;
Yen, A. ;
Corbacioglu, S. .
NEW ENGLAND JOURNAL OF MEDICINE, 2021, 384 (03) :252-260
[36]   Synthetic recording and in situ readout of lineage information in single cells [J].
Frieda, Kirsten L. ;
Linton, James M. ;
Hormoz, Sahand ;
Choi, Joonhyuk ;
Chow, Ke-Huan K. ;
Singer, Zakary S. ;
Budde, Mark W. ;
Elowitz, Michael B. ;
Cai, Long .
NATURE, 2017, 541 (7635) :107-+
[37]   Epithelial Skin Biology: Three Decades of Developmental Biology, a Hundred Questions Answered and a Thousand New Ones to Address [J].
Fuchs, Elaine .
ESSAYS ON DEVELOPMENTAL BIOLOGY, PT A, 2016, 116 :357-+
[38]   Programmable base editing of A.T to G.C in genomic DNA without DNA cleavage [J].
Gaudelli, Nicole M. ;
Komor, Alexis C. ;
Rees, Holly A. ;
Packer, Michael S. ;
Badran, Ahmed H. ;
Bryson, David I. ;
Liu, David R. .
NATURE, 2017, 551 (7681) :464-+
[39]   Fgf9 from dermal γδ T cells induces hair follicle neogenesis after wounding [J].
Gay, Denise ;
Kwon, Ohsang ;
Zhang, Zhikun ;
Spata, Michelle ;
Plikus, Maksim V. ;
Holler, Phillip D. ;
Ito, Mayumi ;
Yang, Zaixin ;
Treffeisen, Elsa ;
Kim, Chang D. ;
Nace, Arben ;
Zhang, Xiaohong ;
Baratono, Sheena ;
Wang, Fen ;
Ornitz, David M. ;
Millar, Sarah E. ;
Cotsarelis, George .
NATURE MEDICINE, 2013, 19 (07) :916-+
[40]   Stem Cell Lineage Infidelity Drives Wound Repair and Cancer [J].
Ge, Yejing ;
Gomez, Nicholas C. ;
Adam, Rene C. ;
Nikolova, Maria ;
Yang, Hanseul ;
Verma, Akanksha ;
Lu, Catherine Pei-Ju ;
Polak, Lisa ;
Yuan, Shaopeng ;
Elemento, Olivier ;
Fuchs, Elaine .
CELL, 2017, 169 (04) :636-650