Artificial Intelligence, Lymphoid Neoplasms, and Prediction of MYC, BCL2, and BCL6 Gene Expression Using a Pan-Cancer Panel in Diffuse Large B-Cell Lymphoma

被引:2
|
作者
Carreras, Joaquim [1 ]
Nakamura, Naoya [1 ]
机构
[1] Tokai Univ, Sch Med, Dept Pathol, 143 Shimokasuya, Isehara, Kanagawa 2591193, Japan
来源
HEMATO | 2024年 / 5卷 / 02期
基金
日本学术振兴会;
关键词
artificial intelligence; machine learning; artificial neural networks; lymphoma; hematological neoplasia; immuno-oncology; MYC; BCL2; BCL6; diffuse large B-cell lymphoma; APPROXIMATION; SURVIVAL; CLASSIFICATION; PROGNOSIS; DIAGNOSIS; DISEASE;
D O I
10.3390/hemato5020011
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background: Artificial intelligence in medicine is a field that is rapidly evolving. Machine learning and deep learning are used to improve disease identification and diagnosis, personalize disease treatment, analyze medical images, evaluate clinical trials, and speed drug development. Methods: First, relevant aspects of AI are revised in a comprehensive manner, including the classification of hematopoietic neoplasms, types of AI, applications in medicine and hematological neoplasia, generative pre-trained transformers (GPTs), and the architecture and interpretation of feedforward neural net-works (multilayer perceptron). Second, a series of 233 diffuse large B-cell lymphoma (DLBCL) patients treated with rituximab-CHOP from the Lymphoma/Leukemia Molecular Profiling Project (LLMPP) was analyzed. Results: Using conventional statistics, the high expression of MYC and BCL2 was associated with poor survival, but high BCL6 was associated with a favorable overall survival of the patients. Then, a neural network predicted MYC, BCL2, and BCL6 with high accuracy using a pan-cancer panel of 758 genes of immuno-oncology and translational research that includes clinically relevant actionable genes and pathways. A comparable analysis was performed using gene set enrichment analysis (GSEA). Conclusions: The mathematical way in which neural networks reach conclusions has been considered a black box, but a careful understanding and evaluation of the architectural design allows us to interpret the results logically. In diffuse large B-cell lymphoma, neural networks are a plausible data analysis approach.
引用
收藏
页码:119 / 143
页数:25
相关论文
共 50 条
  • [1] Coexistent Rearrangements of c-MYC, BCL2, and BCL6 genes in a diffuse large B-cell lymphoma
    Ueda, C
    Nishikori, M
    Kitawaki, T
    Uchiyama, T
    Ohno, H
    INTERNATIONAL JOURNAL OF HEMATOLOGY, 2004, 79 (01) : 52 - 54
  • [2] Prognostic impact of diffuse large B-cell lymphoma with extra copies of MYC, BCL2 and/or BCL6: comparison with double/triple hit lymphoma and double expressor lymphoma
    Huang, Sixia
    Nong, Lin
    Wang, Wei
    Liang, Li
    Zheng, Yalin
    Liu, Jumei
    Li, Dong
    Li, Xin
    Zhang, Bo
    Li, Ting
    DIAGNOSTIC PATHOLOGY, 2019, 14 (1)
  • [3] BCL2, BCL6, IGH, TP53, and MYC protein expression and gene rearrangements as prognostic markers in diffuse large B-cell lymphoma: a study of 44 Turkish patients
    Akay, Olga Me Item
    Aras, Beyhan Durak
    Isiksoy, Serap
    Toprak, Cigdem
    Mutlu, Fezan Sahin
    Artan, Sevilhan
    Oner, Ulku
    Gulbas, Zafer
    CANCER GENETICS, 2014, 207 (03) : 87 - 93
  • [4] Extra copies of MYC, BCL2, and BCL6 and outcome in patients with diffuse large B-cell lymphoma
    Sermer, David
    Bobillo, Sabela
    Dogan, Ahmet
    Zhang, Yanming
    Seshan, Venkatraman
    Lavery, Jessica A.
    Batlevi, Connie
    Caron, Philip
    Hamilton, Audrey
    Hamlin, Paul
    Horwitz, Steven
    Joffe, Erel
    Kumar, Anita
    Matasar, Matthew
    Noy, Ariela
    Owens, Colette
    Moskowitz, Alison
    Palomba, M. Lia
    Straus, David
    von Keudell, Gottfried
    Rodriguez-Rivera, Ildefonso
    Falchi, Lorenzo
    Zelenetz, Andrew
    Yahalom, Joachim
    Younes, Anas
    BLOOD ADVANCES, 2020, 4 (14) : 3382 - 3390
  • [5] High-grade B-cell lymphoma with MYC and BCL2 and/or BCL6 rearrangements with diffuse large B-cell lymphoma morphology
    Scott, David W.
    King, Rebecca L.
    Staiger, Annette M.
    Ben-Neriah, Susana
    Jiang, Aixiang
    Horn, Heike
    Mottok, Anja
    Farinha, Pedro
    Slack, Graham W.
    Ennishi, Daisuke
    Schmitz, Norbert
    Pfreundschuh, Michael
    Nowakowski, Grzegorz S.
    Kahl, Brad S.
    Connors, Joseph M.
    Gascoyne, Randy D.
    Ott, German
    Macon, William R.
    Rosenwald, Andreas
    BLOOD, 2018, 131 (18) : 2060 - 2064
  • [6] Prognostic significance of MYC, BCL2, and BCL6 rearrangements in patients with diffuse large B-cell lymphoma treated with cyclophosphamide, doxorubicin, vincristine, and prednisone plus rituximab
    Akyurek, Nalan
    Uner, Aysegul
    Benekli, Mustafa
    Barista, Ibrahim
    CANCER, 2012, 118 (17) : 4173 - 4183
  • [7] What does MYC, BCL2, and BCL6 genes 'rearranged' mean in large cell/diffuse B-cell lymphomas?
    Trombetta, Domenico
    Zanelli, Magda
    Garuti, Anna
    Carosi, Illuminato
    Mastracci, Luca
    Ascani, Stefano
    Graziano, Paolo
    Parente, Paola
    PATHOLOGY RESEARCH AND PRACTICE, 2022, 240
  • [8] Prognostic impact of diffuse large B-cell lymphoma with extra copies of MYC, BCL2 and/or BCL6: comparison with double/triple hit lymphoma and double expressor lymphoma
    Sixia Huang
    Lin Nong
    Wei Wang
    Li Liang
    Yalin Zheng
    Jumei Liu
    Dong Li
    Xin Li
    Bo Zhang
    Ting Li
    Diagnostic Pathology, 14
  • [9] Rearrangement of the BCL6 gene in B-cell lymphoid neoplasms: Comparison with lymphomas associated with BCL2 rearrangement
    Muramatsu, M
    Akasaka, T
    Kadowaki, N
    Ohno, H
    Yamabe, H
    Edamura, S
    Doi, S
    Mori, T
    Okuma, M
    Fukuhara, S
    BRITISH JOURNAL OF HAEMATOLOGY, 1996, 93 (04) : 911 - 920
  • [10] BCL2 and BCL6 atypical/unbalanced gene rearrangements in diffuse large B-cell lymphoma are indicators of an aggressive clinical course
    Tourneret, Alicia
    Alame, Melissa
    Rigau, Valerie
    Bauchet, Luc
    Fabbro, Michel
    De Oliveira, Laura
    Cacheux, Valere
    Costes, Valerie
    Lacheretz-Szablewski, Vanessa
    JOURNAL OF CLINICAL PATHOLOGY, 2021, 74 (10) : 650 - 656