Bayesian Tensor Modeling for Image-based Classification of Alzheimer's Disease

被引:0
作者
Lyu, Rongke [1 ]
Vannucci, Marina [1 ]
Kundu, Suprateek [2 ]
机构
[1] Rice Univ, Dept Stat, Houston 77005, TX USA
[2] MD Anderson Canc Ctr, Dept Biostat, Houston, TX USA
关键词
Alzheimer's disease; Bayesian tensor modeling; Logistic regression; Support vector machines; Neuroimaging analysis; VARIABLE SELECTION; REGRESSION; MRI; REGULARIZATION;
D O I
10.1007/s12021-024-09669-3
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Tensor-based representations are being increasingly used to represent complex data types such as imaging data, due to their appealing properties such as dimension reduction and the preservation of spatial information. Recently, there is a growing literature on using Bayesian scalar-on-tensor regression techniques that use tensor-based representations for high-dimensional and spatially distributed covariates to predict continuous outcomes. However surprisingly, there is limited development on corresponding Bayesian classification methods relying on tensor-valued covariates. Standard approaches that vectorize the image are not desirable due to the loss of spatial structure, and alternate methods that use extracted features from the image in the predictive model may suffer from information loss. We propose a novel data augmentation-based Bayesian classification approach relying on tensor-valued covariates, with a focus on imaging predictors. We propose two data augmentation schemes, one resulting in a support vector machine (SVM) type of classifier, and another yielding a logistic regression classifier. While both types of classifiers have been proposed independently in literature, our contribution is to extend such existing methodology to accommodate high-dimensional tensor valued predictors that involve low rank decompositions of the coefficient matrix while preserving the spatial information in the image. An efficient Markov chain Monte Carlo (MCMC) algorithm is developed for implementing these methods. Simulation studies show significant improvements in classification accuracy and parameter estimation compared to routinely used classification methods. We further illustrate our method in a neuroimaging application using cortical thickness MRI data from Alzheimer's Disease Neuroimaging Initiative, with results displaying better classification accuracy throughout several classification tasks, including classification on pairs of the three diagnostic groups: normal control, AD patients, and MCI patients; gender classification (males vs females); and cognitive performance based on high and low levels of MMSE scores.
引用
收藏
页码:437 / 455
页数:19
相关论文
共 55 条
[1]   Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls [J].
Arbabshirani, Mohammad R. ;
Plis, Sergey ;
Sui, Jing ;
Calhoun, Vince D. .
NEUROIMAGE, 2017, 145 :137-165
[2]   GENERALIZED DOUBLE PARETO SHRINKAGE [J].
Armagan, Artin ;
Dunson, David B. ;
Lee, Jaeyong .
STATISTICA SINICA, 2013, 23 (01) :119-143
[3]   Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain [J].
Avants, B. B. ;
Epstein, C. L. ;
Grossman, M. ;
Gee, J. C. .
MEDICAL IMAGE ANALYSIS, 2008, 12 (01) :26-41
[4]   penalizedSVM: a R-package for feature selection SVM classification [J].
Becker, Natalia ;
Werft, Wiebke ;
Toedt, Grischa ;
Lichter, Peter ;
Benner, Axel .
BIOINFORMATICS, 2009, 25 (13) :1711-1712
[5]   A multivariate Bayesian classification algorithm for cerebral stage prediction by diffusion tensor imaging in amyotrophic lateral sclerosis [J].
Behler, Anna ;
Mueller, Hans-Peter ;
Ludolph, Albert C. ;
Lule, Dorothee ;
Kassubek, Jan .
NEUROIMAGE-CLINICAL, 2022, 35
[6]   Classification of Alzheimer's disease subjects from MRI using hippocampal visual features [J].
Ben Ahmed, Olfa ;
Benois-Pineau, Jenny ;
Allard, Michele ;
Ben Amar, Chokri ;
Catheline, Gwenaeelle .
MULTIMEDIA TOOLS AND APPLICATIONS, 2015, 74 (04) :1249-1266
[7]   The effects of aging in the hippocampus and cognitive decline [J].
Bettio, Luis E. B. ;
Rajendran, Luckshi ;
Gil-Mohapel, Joana .
NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS, 2017, 79 :66-86
[8]   Bayesian Dynamic Tensor Regression [J].
Billio, Monica ;
Casarin, Roberto ;
Iacopini, Matteo ;
Kaufmann, Sylvia .
JOURNAL OF BUSINESS & ECONOMIC STATISTICS, 2023, 41 (02) :429-439
[9]   Pathology of the insular cortex in Alzheimer disease depends on cortical architecture [J].
Bonthius, DJ ;
Solodkin, A ;
Van Hoesen, GW .
JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 2005, 64 (10) :910-922
[10]  
Bradley P. S., 1998, Machine Learning. Proceedings of the Fifteenth International Conference (ICML'98), P82