Oil palm (Elaeis guineensis Jacq.) germplasm genome-wide association analysis for the oil yield traits utilizing microsatellite markers

被引:1
|
作者
Bhagya, H. P. [1 ]
Babu, B. Kalyana [2 ]
Mathur, R. K. [3 ]
Ramajayam, D. [4 ]
Ravichandran, G. [2 ]
Anitha, P. [2 ]
机构
[1] ICAR Directorate Cashew Res, Puttur 574202, Karnataka, India
[2] ICAR Indian Inst Oil Palm Res, Pedavegi 534450, Andhra Pradesh, India
[3] ICAR Indian Inst oil seed Res, Hyderabad 500030, India
[4] ICAR Indian Inst Soil & Water Conservat, Sunabeda 763002, Odisha, India
关键词
Correlation; Mapping; Oil to bunch ratio; Principal component analysis; Quantitative trait locus; GENETIC DIVERSITY; LOCI; PERFORMANCE; ACCESSIONS;
D O I
10.1016/j.indcrop.2024.118934
中图分类号
S2 [农业工程];
学科分类号
0828 ;
摘要
The genome-wide association study used 115 oil palm genotypes and assessed seven oil properties using fifty-four SSR markers. The diversity analysis study classified these genotypes into two major groupings. The mixed linear model (MLM) method revealed a significant correlation between mEgCIR0037 and mEgCIR0782 and the kernel-to-fruit (KF) ratio (p<0.01). The shell-to-fruit ratio trait was associated with mEgCIR0425, whereas the oil-to-dry mesocarp (ODM) trait was linked to mEgCIR0782. QTLs discovered during validation can be utilized to revalidate in different populations. Among these genotypes, 21 tenera (>24 %) and 30 dura (>20 %) had a high oil-to-bunch ratio. The genotypes IC0610002-79, IC0610005-103, IC0610011-181, ICO610013-224, and IC0610018-23 had oil-to-bunch ratios greater than 30 %. The genotypes that have been found are appropriate for use in breeding programs to generate parental material for the creation of hybrids.
引用
收藏
页数:9
相关论文
共 50 条
  • [21] Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)
    Zhou, Lixia
    Yarra, Rajesh
    Cao, Hongxing
    Zhao, Zhihao
    TROPICAL PLANT BIOLOGY, 2021, 14 (01) : 63 - 71
  • [22] Deciphering key proteins of oil palm (Elaeis guineensis Jacq.) fruit mesocarp development by proteomics and chemometrics
    Hassan, Hasliza
    Amiruddin, Mohd Din
    Weckwerth, Wolfram
    Ramli, Umi Salamah
    ELECTROPHORESIS, 2019, 40 (02) : 254 - 265
  • [23] Morpho-agronomic and molecular characterisation of oil palm Elaeis guineensis Jacq. material from Angola
    Diana Arias
    Maria González
    Fausto Prada
    Edwin Restrepo
    Hernán Romero
    Tree Genetics & Genomes, 2013, 9 : 1283 - 1294
  • [24] Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)
    Lixia Zhou
    Rajesh Yarra
    Hongxing Cao
    Zhihao Zhao
    Tropical Plant Biology, 2021, 14 : 63 - 71
  • [25] EFFECTS OF NEONICOTINOID AND METHOD OF BREAKING DORMANCY ON SEED GERMINATION AND SEEDLING VIGOUR OF OIL PALM (Elaeis guineensis Jacq.)
    Chanprasert, W.
    Myint, T.
    Srikul, S.
    Wongsri, O.
    JOURNAL OF OIL PALM RESEARCH, 2012, 24 : 1227 - 1234
  • [26] Assessment of genetic diversity and population structure of oil palm (Elaeis guineensis Jacq.) field genebank: A step towards molecular-assisted germplasm conservation
    Gan, Siou Ting
    Teo, Chin Jit
    Manirasa, Shobana
    Wong, Wei Chee
    Wong, Choo Kien
    PLOS ONE, 2021, 16 (07):
  • [27] Development of SNP markers and their application for genetic diversity analysis in the oil palm (Elaeis guineensis)
    Ong, P. W.
    Maizura, I.
    Abdullah, N. A. P.
    Rafii, M. Y.
    Ooi, L. C. L.
    Low, E. T. L.
    Singh, R.
    GENETICS AND MOLECULAR RESEARCH, 2015, 14 (04): : 12205 - 12216
  • [28] Genome-wide identification of markers for selecting higher oil content in oil palm
    Bai, Bin
    Wang, Le
    Lee, May
    Zhang, Yingjun
    Rahmadsyah
    Alfiko, Yuzer
    Ye, Bao Qing
    Wan, Zi Yi
    Lim, Chin Huat
    Suwanto, Antonius
    Chua, Nam-Hai
    Yue, Gen Hua
    BMC PLANT BIOLOGY, 2017, 17
  • [29] Genome-wide identification of markers for selecting higher oil content in oil palm
    Bin Bai
    Le Wang
    May Lee
    Yingjun Zhang
    Yuzer Rahmadsyah
    Bao Qing Alfiko
    Zi Yi Ye
    Chin Huat Wan
    Antonius Lim
    Nam-Hai Suwanto
    Gen Hua Chua
    BMC Plant Biology, 17
  • [30] Near infrared spectroscopy: a rapid and non-destructive technique to assess the ripeness of oil palm (Elaeis guineensis Jacq.) fresh fruit
    Silalahi, Divo Dharma
    Reano, Consorcia E.
    Lansigan, Felino P.
    Panopio, Rolando G.
    Bantayan, Nathaniel C.
    Davrieux, Fabrice
    Caliman, J. P.
    Yuan, Yong Yit
    Sudarno
    JOURNAL OF NEAR INFRARED SPECTROSCOPY, 2016, 24 (02) : 179 - 190