The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-Transhimalaya biota?

被引:3
作者
Hofmann, Sylvia [1 ]
Podsiadlowski, Lars [1 ]
Andermann, Tobias [2 ]
Matschiner, Michael [3 ]
Baniya, Chitra B. [4 ]
Litvinchuk, Spartak N. [5 ]
Martin, Sebastian [1 ]
Masroor, Rafaqat [6 ]
Yang, Jianhuan [7 ]
Zheng, Yuchi [8 ]
Jablonski, Daniel [9 ]
Schmidt, Joachim [10 ]
机构
[1] Museum Koenig, Leibniz Inst Anal Biodivers Change, D-53113 Bonn, Germany
[2] Uppsala Univ, Evolutionary Biol Ctr, S-75236 Uppsala, Sweden
[3] Univ Oslo, Nat Hist Museum, N-0562 Oslo, Norway
[4] Tribhuvan Univ, Cent Dept Bot, Kathmandu 44618, Nepal
[5] Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia
[6] Pakistan Museum Nat Hist, Islamabad 44000, Pakistan
[7] Kadoorie Farm & Bot Garden, Kadoorie Conservat China, Hong Kong, Peoples R China
[8] Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Peoples R China
[9] Comenius Univ, Dept Zool, Bratislava 84215, Slovakia
[10] Univ Rostock, Inst Biosci, Gen & Systemat Zool, D-18055 Rostock, Germany
关键词
Gangdese Shan; Lazy toads; Miocene; Phylogenomic; Tibetan Plateau; Uplift; COMPLETE MITOCHONDRIAL GENOME; MAXIMUM-LIKELIHOOD INFERENCE; DNA-SEQUENCE DATA; TIBETAN PLATEAU; GEOGRAPHIC RANGE; SOUTHERN TIBET; LATE-EOCENE; FROG; TREE; EVOLUTION;
D O I
10.1016/j.ympev.2024.108166
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The orographic evolution of the Himalaya-Tibet Mountain system continues to be a subject of controversy, leading to considerable uncertainty regarding the environment and surface elevation of the Tibetan Plateau during the Cenozoic era. As many geoscientific (but not paleontological) studies suggest, elevations close to modern heights exist in vast areas of Tibet since at least the late Paleogene, implicating the presence of largescale alpine environments for more than 30 million years. To explore a recently proposed alternative model that assumes a warm temperate environment across paleo-Tibet, we carried out a phylogeographic survey using genomic analyses of samples covering the range of endemic lazy toads (Scutiger) across the Himalaya-Tibet orogen. We identified two main clades, with several, geographically distinct subclades. The long temporal gap between the stem and crown age of Scutiger may suggest high extinction rates. Diversification within the crown group, depending on the calibration, occurred either from the Mid-Miocene or Late-Miocene and continued until the Holocene. The present-day Himalayan Scutiger fauna could have evolved from lineages that existed on the southern edges of the paleo-Tibetan area (the Transhimalaya = Gangdese Shan), while extant species living on the eastern edge of the Plateau originated probably from the eastern edges of northern parts of the ancestral Tibetan area (Hoh Xil, Tanggula Shan). Based on the Mid-Miocene divergence time estimation and ancestral area reconstruction, we propose that uplift-associated aridification of a warm temperate Miocene-Tibet, coupled with high extirpation rates of ancestral populations, and species range shifts along drainage systems and epigenetic transverse valleys of the rising mountains, is a plausible scenario explaining the phylogenetic structure of Scutiger. This hypothesis aligns with the fossil record but conflicts with geoscientific concepts of high elevated Tibetan Plateau since the late Paleogene. Considering a Late-Miocene/Pliocene divergence time, an alternative scenario of dispersal from SE Asia into the East, Central, and West Himalaya cannot be excluded, although essential evolutionary and biogeographic aspects remain unresolved within this model.
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相关论文
共 121 条
[1]   ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era [J].
Aberer, Andre J. ;
Kobert, Kassian ;
Stamatakis, Alexandros .
MOLECULAR BIOLOGY AND EVOLUTION, 2014, 31 (10) :2553-2556
[2]   The uppermost Oligocene Kailas flora from southern Tibetan Plateau and its implications for the uplift history of the southern Lhasa terrane [J].
Ai, Keke ;
Shi, Gongle ;
Zhang, Kexin ;
Ji, Junliang ;
Song, Bowen ;
Shen, Tianyi ;
Guo, Shuangxing .
PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, 2019, 515 :143-151
[3]   SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments [J].
Andermann, Tobias ;
Cano, Angela ;
Zizka, Alexander ;
Bacon, Christine ;
Antonelli, Alexandre .
PEERJ, 2018, 6
[4]   Settling a family feud: a high-level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes [J].
Antonelli, Alexandre ;
Clarkson, James J. ;
Kainulainen, Kent ;
Maurin, Olivier ;
Brewer, Grace E. ;
Davis, Aaron P. ;
Epitawalage, Niroshini ;
Goyder, David J. ;
Livshultz, Tatyana ;
Persson, Claes ;
Pokorny, Lisa ;
Straub, Shannon C. K. ;
Struwe, Lena ;
Zuntini, Alexandre R. ;
Forest, Felix ;
Baker, William J. .
AMERICAN JOURNAL OF BOTANY, 2021, 108 (07) :1143-1165
[5]   SEASONAL TEMPERATURES IN BRITAIN DURING THE PAST 22,000 YEARS, RECONSTRUCTED USING BEETLE REMAINS [J].
ATKINSON, TC ;
BRIFFA, KR ;
COOPE, GR .
NATURE, 1987, 325 (6105) :587-592
[6]  
Baez AM, 1998, PALAEONTOLOGY, V41, P669
[7]   The emerging field of geogenomics: Constraining geological problems with genetic data [J].
Baker, Paul A. ;
Fritz, Sherilyn C. ;
Dick, Christopher W. ;
Eckert, Andrew J. ;
Horton, Brian K. ;
Manzoni, Stefano ;
Ribas, Camila C. ;
Garzione, Carmala N. ;
Battisti, David S. .
EARTH-SCIENCE REVIEWS, 2014, 135 :38-47
[8]   Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales [J].
Bi, Ke ;
Vanderpool, Dan ;
Singhal, Sonal ;
Linderoth, Tyler ;
Moritz, Craig ;
Good, Jeffrey M. .
BMC GENOMICS, 2012, 13
[9]   Revised paleoaltimetry data show low Tibetan Plateau elevation during the Eocene [J].
Botsyun, Svetlana ;
Sepulchre, Pierre ;
Donnadieu, Yannick ;
Risi, Camille ;
Licht, Alexis ;
Rugenstein, Jeremy K. Caves .
SCIENCE, 2019, 363 (6430) :946-+
[10]   BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis [J].
Bouckaert, Remco ;
Vaughan, Timothy G. ;
Barido-Sottani, Joelle ;
Duchene, Sebastian ;
Fourment, Mathieu ;
Gavryushkina, Alexandra ;
Heled, Joseph ;
Jones, Graham ;
Kuehnert, Denise ;
De Maio, Nicola ;
Matschiner, Michael ;
Mendes, Fabio K. ;
Mueller, Nicola F. ;
Ogilvie, Huw A. ;
du Plessis, Louis ;
Popinga, Alex ;
Rambaut, Andrew ;
Rasmussen, David ;
Siveroni, Igor ;
Suchard, Marc A. ;
Wu, Chieh-Hsi ;
Xie, Dong ;
Zhang, Chi ;
Stadler, Tanja ;
Drummond, Alexei J. .
PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)