Drought is among the most damaging climatic hazards affecting crop productivity and nutritional quality. Here, we investigated the influence of Cu-based materials at mitigating drought stress in soybeans (Glycine max) during the reproductive stage in order to elucidate effects on productivity. Commercial copper oxide (CuO) nanoparticles (NPs), in-house synthesized copper sulfide (CuS) NPs, and copper sulfate (CuSO4) were foliar applied at 10 mg Cu/L daily for 1 week to soybean that were exposed to water deficit at the onset of flowering, and plants were harvested 5 days after exposure. Drought inhibited flower production by 27% compared to the nondrought treatment. Notably, both CuS NPs and ionic Cu mitigated the drought-induced inhibition of flower production, showing 41.7 and 33.3% improvement. CuS NPs exhibited the most positive impact on restoring shoot biomass, pod biomass, and shoot moisture content, increasing values by 53, 96, and 10%, respectively, compared to the drought control plants. The Cu-based materials maintained photosynthetic parameters under drought conditions and modulated oxidative damage by enhancing reactive oxygen species-scavenging enzyme activities. Furthermore, CuO NP treatment increased shoot and pod Cu levels by 624 and 54%, respectively, compared to the drought control plants. Taken together, these findings suggest that Cu-based materials modulate plant protective mechanisms against drought stress during the flowering stage, offering a potentially important nanoenabled strategy to promote biofortified climate resilient crops.