Tn5 transposase: a key tool to decrypt random transposition

被引:1
作者
Xu, Ying [1 ]
Zhou, Huimin [1 ]
Song, Fangyuan [1 ]
Chen, Huayou [1 ]
Ni, Zhong [1 ]
机构
[1] Jiangsu Univ, Sch Life Sci, Zhenjiang 212013, Jiangsu, Peoples R China
关键词
Transposition; Tn5; transposase; Insertion site preference; Library preparation; DNA-BINDING PROTEINS; ACTIVE-SITE; TN10; TRANSPOSITION; OPEN-CHROMATIN; CELL; TAGMENTATION; INSIGHTS; PURIFICATION; MUTAGENESIS; OCCUPANCY;
D O I
10.1007/s12257-024-00118-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
With the development of modern molecular biotechnology and the continuous deepening of research on gene function, Tn5 transposase has received more and more attention due to its characteristics of randomness and high efficiency in transposition. It has now been widely used as an important tool in the field of molecular biology and genetic engineering. Known for its "cut-and-paste" mechanism that allows for the integration or mobilization of DNA sequences within genomes, making it good at library construction of high-throughput sequencing. However, the weakness still exists in Tn5 transposase that hinders its further application. This article primarily reviews the architecture, catalytic mechanism, and functional modification of Tn5 transposase, as well as its application in advanced transgenic editing and library construction of sequencing. Furthermore, it provides prospects for future research in this field.
引用
收藏
页码:779 / 791
页数:13
相关论文
共 80 条
[1]   Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes [J].
Ackermann, Amanda M. ;
Wang, Zhiping ;
Schug, Jonathan ;
Naji, Ali ;
Kaestner, Klaus H. .
MOLECULAR METABOLISM, 2016, 5 (03) :233-244
[2]   Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition [J].
Adey, Andrew ;
Morrison, Hilary G. ;
Asan ;
Xun, Xu ;
Kitzman, Jacob O. ;
Turner, Emily H. ;
Stackhouse, Bethany ;
MacKenzie, Alexandra P. ;
Caruccio, Nicholas C. ;
Zhang, Xiuqing ;
Shendure, Jay .
GENOME BIOLOGY, 2010, 11 (12)
[3]   Mutational analysis of the base flipping event found in Tn5 transposition [J].
Ason, B ;
Reznikoff, WS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (13) :11284-11291
[4]   TRANSPOSITION OF R-FACTOR GENES TO BACTERIOPHAGE-LAMBDA [J].
BERG, DE ;
DAVIES, J ;
ALLET, B ;
ROCHAIX, JD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1975, 72 (09) :3628-3632
[5]  
Brunelle M, 2017, METHODS MOL BIOL, V1528, P229, DOI 10.1007/978-1-4939-6630-1_14
[6]   Single-cell chromatin accessibility reveals principles of regulatory variation [J].
Buenostro, Jason D. ;
Wu, Beijing ;
Litzenburger, Ulrike M. ;
Ruff, Dave ;
Gonzales, Michael L. ;
Snyder, Michael P. ;
Chang, Howard Y. ;
Greenleaf, William J. .
NATURE, 2015, 523 (7561) :486-U264
[7]  
Buenrostro JD, 2013, NAT METHODS, V10, P1213, DOI [10.1038/NMETH.2688, 10.1038/nmeth.2688]
[8]   Binding of different divalent cations to the active site of avian sarcoma virus integrase and their effects on enzymatic activity [J].
Bujacz, G ;
Alexandratos, J ;
Wlodawer, A .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (29) :18161-18168
[9]   A decade of advances in transposon-insertion sequencing [J].
Cain, Amy K. ;
Barquist, Lars ;
Goodman, Andrew L. ;
Paulsen, Ian T. ;
Parkhill, Julian ;
van Opijnen, Tim .
NATURE REVIEWS GENETICS, 2020, 21 (09) :526-540
[10]   Shortened ex vivo manufacturing time of EGFRvIII-specific chimeric antigen receptor (CAR) T cells reduces immune exhaustion and enhances antiglioma therapeutic function [J].
Caruso, Hillary G. ;
Tanaka, Ryuma ;
Liang, Jiyong ;
Ling, Xiaoyang ;
Sabbagh, Aria ;
Henry, Verlene K. ;
Collier, Tiara L. ;
Heimberger, Amy B. .
JOURNAL OF NEURO-ONCOLOGY, 2019, 145 (03) :429-439