Heavy metal ions (HMI), a non-degradable toxic substance, has raised widespread concerns in water purification. Membrane separation is a considerable and promising technology for removing HMIs from water, due to its environmentally friendly, clean and highly effective. This study reported a functional composite ultrafiltration membrane prepared from natural biomolecules epsilon-Poly-L-lysine hydrochloride (PLL), sodium lingo sulfonate (SLS) or sodium alginate (SA) based on the combination strategy of chemical graft and layer-by-layer assembly. The fabricated membrane exhibited a high pure water flux (2957 L center dot m(-2)center dot h(-1) ), high capture efficiency for Cu2+ (99.1 %) and Pb2+ (98.9 %). Notably, the layer-by-layer assembly strategy provides abundant groups for HMI binding, ensuring the high capture efficiency. The fabricated membrane demonstrated a low flux decline (9 %), along with a high flux recovery ratio (99.2 %). Moreover, it exhibited exceptional stability and reusability across a wide pH range (pH 5-9), meanwhile maintaining a capture efficiency of approximately 99 % under near-neutral condition after undergoing 5 cycle experiments for both Cu (2+) and Pb2+. Our work builds a straightforward approach for UF membrane fabricating with excellent HMI capture capacity, displaying the potential application in HMI waste water purification.