Genome sequencing of correlated pathogenic Escherichia coli and Enterococcus associated with recurrent urinary tract infections

被引:0
作者
Hogins, Jacob [1 ]
Do, Hung P. [1 ]
Dashti, Marjan Ganjali [1 ]
Zimmern, Philippe E. [2 ]
Reitzer, Larry [1 ]
机构
[1] Univ Texas Dallas, Dept Mol & Cellular Biol, Richardson, TX 75080 USA
[2] Univ Texas Southwestern, Dept Urol, Dallas, TX USA
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 07期
关键词
urinary tract infection; Escherichia coli; Enterococcus; pathogenesis; pathogens;
D O I
10.1128/mra.00147-24
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Reported here are the sequences for 11 Escherichia coli and four Enterococcus strains isolated from post-menopausal women with a recurrent urinary tract infection. Each of the Enterococcus strains were isolated along with an E. coli strain. This provides a resource of high-quality complete genomes from polymicrobial infections.
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页数:4
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共 10 条
  • [1] QUAST: quality assessment tool for genome assemblies
    Gurevich, Alexey
    Saveliev, Vladislav
    Vyahhi, Nikolay
    Tesler, Glenn
    [J]. BIOINFORMATICS, 2013, 29 (08) : 1072 - 1075
  • [2] Genome Sequences of Seven Clade B2 Escherichia coli Strains Associated with Recurrent Urinary Tract Infections in Postmenopausal Women
    Hogins, Jacob
    Zimmern, Philippe E.
    Reitzer, Larry
    [J]. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023, 12 (05):
  • [3] Circlator: automated circularization of genome assemblies using long sequencing reads
    Hunt, Martin
    De Silva, Nishadi
    Otto, Thomas D.
    Parkhill, Julian
    Keane, Jacqueline A.
    Harris, Simon R.
    [J]. GENOME BIOLOGY, 2015, 16
  • [4] Genome Modification in Enterococcus faecalis OG1RF Assessed by Bisulfite Sequencing and Single-Molecule Real-Time Sequencing
    Huo, Wenwen
    Adams, Hannah M.
    Zhang, Michael Q.
    Palmer, Kelli L.
    [J]. JOURNAL OF BACTERIOLOGY, 2015, 197 (11) : 1939 - 1951
  • [5] Assembly of long, error-prone reads using repeat graphs
    Kolmogorov, Mikhail
    Yuan, Jeffrey
    Lin, Yu
    Pevzner, Pavel A.
    [J]. NATURE BIOTECHNOLOGY, 2019, 37 (05) : 540 - +
  • [6] RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
    Li, Wenjun
    O'Neill, Kathleen R.
    Haft, Daniel H.
    DiCuccio, Michael
    Chetvernin, Vyacheslav
    Badretdin, Azat
    Coulouris, George
    Chitsaz, Farideh
    Derbyshire, Myra K.
    Durkin, A. Scott
    Gonzales, Noreen R.
    Gwadz, Marc
    Lanczycki, Christopher J.
    Song, James S.
    Thanki, Narmada
    Wang, Jiyao
    Yamashita, Roxanne A.
    Yang, Mingzhang
    Zheng, Chanjuan
    Marchler-Bauer, Aron
    Thibaud-Nissen, Francoise
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D1020 - D1028
  • [7] Enterococcus faecalis Promotes Innate Immune Suppression and Polymicrobial Catheter-Associated Urinary Tract Infection
    Tien, Brenda Yin Qi
    Goh, Hwee Mian Sharon
    Chong, Kelvin Kian Long
    Bhaduri-Tagore, Soumili
    Holec, Sarah
    Dress, Regine
    Ginhoux, Florent
    Ingersoll, Molly A.
    Williams, Rohan B. H.
    Kline, Kimberly A.
    [J]. INFECTION AND IMMUNITY, 2017, 85 (12)
  • [8] ENTEROCOCCUS-FAECALIS AGGRAVATES PYELONEPHRITIS CAUSED BY PSEUDOMONAS-AERUGINOSA IN EXPERIMENTAL ASCENDING MIXED URINARY-TRACT INFECTION IN MICE
    TSUCHIMORI, N
    HAYASHI, R
    SHINO, A
    YAMAZAKI, T
    OKONOGI, K
    [J]. INFECTION AND IMMUNITY, 1994, 62 (10) : 4534 - 4541
  • [9] Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
    Walker, Bruce J.
    Abeel, Thomas
    Shea, Terrance
    Priest, Margaret
    Abouelliel, Amr
    Sakthikumar, Sharadha
    Cuomo, Christina A.
    Zeng, Qiandong
    Wortman, Jennifer
    Young, Sarah K.
    Earl, Ashlee M.
    [J]. PLOS ONE, 2014, 9 (11):
  • [10] Completing bacterial genome assemblies with multiplex MinION sequencing
    Wick, Ryan R.
    Judd, Louise M.
    Gorrie, Claire L.
    Holt, Kathryn E.
    [J]. MICROBIAL GENOMICS, 2017, 3 (10):