Spectroelectrochemistry for determination of the redox potential in heme enzymes: Dye-decolorizing peroxidases

被引:0
作者
Barbosa, Catarina [1 ]
Rodrigues, Carolina F. [1 ]
Loncar, Nikola [2 ]
Martins, Ligia O. [1 ]
Todorovic, Smilja [1 ]
Silveira, Celia M. [1 ]
机构
[1] Univ NOVA Lisboa, Inst Tecnol Quim & Biol Antonio Xavier, Av Republ, P-2780157 Oeiras, Portugal
[2] Gecco Biotech, Nijenborgh 4, NL-9747 AG Groningen, Netherlands
来源
BBA ADVANCES | 2024年 / 5卷
关键词
Heme proteins; Redox potential; Spectroelectrochemistry; Dye decolorizing peroxidases; SITE-DIRECTED MUTAGENESIS; CYTOCHROME-C; ELECTRON-TRANSFER; MECHANISTIC INSIGHTS; CATALYTIC-PROPERTIES; DYNAMICS; PROTEIN; HEMOPROTEINS; SPECTROSCOPY; REDUCTION;
D O I
10.1016/j.bbadva.2023.100112
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Dye-decolorizing peroxidases (DyPs) are heme-containing enzymes that are structurally unrelated to other peroxidases. Some DyPs show high potential for applications in biotechnology, which critically depends on the stability and redox potential (E degrees ' ) of the enzyme. Here we provide a comparative analysis of UV-Vis- and surfaceenhanced resonance Raman -based spectroelectrochemical methods for determination of the E degrees ' of DyPs from two different organisms, and their variants generated targeting E degrees ' upshift. We show that substituting the highly conserved Arginine in the distal side of the heme pocket by hydrophobic amino acid residues impacts the heme architecture and redox potential of DyPs from the two organisms in a very distinct manner. We demonstrate the advantages and drawbacks of the used spectroelectrochemical approaches, which is relevant for other heme proteins that contain multiple heme centers or spin populations.
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页数:9
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共 68 条
[1]   ALTERATION OF HUMAN MYOGLOBIN PROXIMAL HISTIDINE TO CYSTEINE OR TYROSINE BY SITE-DIRECTED MUTAGENESIS - CHARACTERIZATION AND THEIR CATALYTIC ACTIVITIES [J].
ADACHI, S ;
NAGANO, S ;
WATANABE, Y ;
ISHIMORI, K ;
MORISHIMA, I .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1991, 180 (01) :138-144
[2]   Unraveling the electron transfer processes of a nanowire protein from Geobacter sulfurreducens [J].
Alves, Monica N. ;
Fernandes, Ana P. ;
Salgueiro, Carlos A. ;
Paquete, Catarina M. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2016, 1857 (01) :7-13
[3]   Spectroscopic analysis of immobilised redox enzymes under direct electrochemical control [J].
Ash, Philip A. ;
Vincent, Kylie A. .
CHEMICAL COMMUNICATIONS, 2012, 48 (10) :1400-1409
[4]   A catalytic approach to estimate the redox potential of heme-peroxidases [J].
Ayala, Marcela ;
Roman, Rosa ;
Vazquez-Duhalt, Rafael .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2007, 357 (03) :804-808
[5]   Immobilized dye-decolorizing peroxidase (DyP) and directed evolution variants for hydrogen peroxide biosensing [J].
Barbosa, Catarina ;
Silveira, Celia M. ;
Silva, Diogo ;
Brissos, Vania ;
Hildebrandt, Peter ;
Martins, Ligia O. ;
Todorovic, Smilja .
BIOSENSORS & BIOELECTRONICS, 2020, 153
[6]   Redox properties of heme peroxidases [J].
Battistuzzi, Gianantonio ;
Bellei, Marzia ;
Bortolotti, Carlo Augusto ;
Sola, Marco .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2010, 500 (01) :21-36
[7]   SIMULTANEOUS DETERMINATION OF HEMES-A, HEMES-B, AND HEMES-C FROM PYRIDINE HEMOCHROME SPECTRA [J].
BERRY, EA ;
TRUMPOWER, BL .
ANALYTICAL BIOCHEMISTRY, 1987, 161 (01) :1-15
[8]   Cyclic voltammetry and spectroelectrochemistry of cytochrome c(8) from Rubrivivax gelatinosus. Implications in photosynthetic electron transfer [J].
Borsari, M ;
Benini, S ;
Marchesi, D ;
Ciurli, S .
INORGANICA CHIMICA ACTA, 1997, 263 (1-2) :379-384
[9]   Engineering a Bacterial DyP-Type Peroxidase for Enhanced Oxidation of Lignin-Related Phenolics at Alkaline pH [J].
Brissos, Vania ;
Tavares, Diogo ;
Sousa, Ana Catarina ;
Robalo, Maria Paula ;
Martins, Ligia O. .
ACS CATALYSIS, 2017, 7 (05) :3454-3465
[10]   Spectroelectrochemical measurements of redox proteins by using a simple UV/visible cell [J].
Cerda, Jose F. ;
Guzman, Carmen X. ;
Zhang, Haibo ;
Amendola, Emily J. ;
Castorino, Jacquelyn D. ;
Millet, Nina ;
Fritz, Andrea L. ;
Houchins, Danielle N. ;
Roeder, Margaret H. .
ELECTROCHEMISTRY COMMUNICATIONS, 2013, 33 :76-79