Binding of Phosphate Species to Ca2+ and Mg2+ in Aqueous Solution

被引:5
|
作者
Findik, Basak Koca [1 ]
Jafari, Majid [2 ]
Song, Lin Frank [3 ]
Li, Zhen [4 ]
Aviyente, Viktorya [1 ]
Merz Jr, Kenneth M. [2 ,4 ]
机构
[1] Bogazici Univ, Dept Chem, TR-34342 Istanbul, Turkiye
[2] Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
[3] Lawrence Livermore Natl Lab, Biochem & Biophys Syst Grp, Livermore, CA 94550 USA
[4] Michigan State Univ, Dept Chem, E Lansing, MI 48824 USA
关键词
MOLECULAR-DYNAMICS; NONBONDED MODEL; METAL-CATIONS; IONS; WATER; PARAMETERS; HYDRATION; TIP3P-FB; ACCOUNT; STORAGE;
D O I
10.1021/acs.jctc.4c00218
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Phosphate derivatives and their interaction with metal cations are involved in many important biological phenomena, so an accurate characterization of the phosphate-metal interaction is necessary to properly understand the role of phosphate-metal contacts in mediating biological function. Herein, we improved the standard 12-6 Lennard-Jones (LJ) potential via the usage of the 12-6-4 LJ model, which incorporates ion-induced dipole interactions. Via parameter scanning, we fine-tuned the 12-6-4 LJ polarizability values to obtain accurate absolute binding free energies for the phosphate anions H2PO4-, HPO42-, PO43- coordinating with Ca2+ and Mg2+. First, we modified the phosphate 12-6-4 LJ parameters to reproduce the solvation free energies of the series of phosphate anions using the thermodynamic integration (TI) method. Then, using the potential mean force (PMF) method, the polarizability of the metal-phosphate interaction was obtained. We show that the free energy profiles of phosphate ions coordinated to Ca2+ and Mg2+ generally show similar trends at longer metal-phosphate distances, while the absolute binding energy values increased with deprotonation. The resulting parameters demonstrate the flexibility of the 12-6-4 LJ-type nonbonded model and its usefulness in accurately describing cation-anion interactions.
引用
收藏
页码:4298 / 4307
页数:10
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