Based on the prognosis model of immunogenes, the prognosis model was constructed to predict the invasion of immune genes and immune cells related to primary liver cancer and its experimental validation

被引:0
|
作者
Yang, Yu -Ping [1 ]
Bai, Min [1 ]
Cheng, Yin-Xia [2 ]
Feng, Xin [1 ]
Zhang, Yan-Ying [1 ]
Zhang, Yuan -Yuan [1 ]
Liu, Meng-Ya [1 ]
Duan, Yong-Qiang [2 ]
机构
[1] Gansu Univ Tradit Chinese Med, Coll Basic Med Sci, Lanzhou 730000, Peoples R China
[2] Ningxia Med Univ, Coll Tradit Chinese Med, Yinchuan 750000, Peoples R China
关键词
Primary liver cancer; Immune-related gene pair; Immune-related gene; Immune cell; Experimental validation; HEPATOCELLULAR-CARCINOMA; EXPRESSION; CTLA-4;
D O I
10.1016/j.heliyon.2024.e27362
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Primary liver cancer (PLC) is a prevalent malignancy of the digestive system characterized by insidious symptom onset and a generally poor prognosis. Recent studies have highlighted a significant correlation between the initiation and prognosis of liver cancer and the immune function of PLC patients. Purpose: Revealing the expression of PLC -related immune genes and the characteristics of immune cell infiltration provides assistance for the analysis of clinical pathological parameters and prognosis of PLC patients. Methods: PLC -related differentially expressed genes (DEGs) with a median absolute deviation (MAD > 0.5) were identified from TCGA and GEO databases. These DEGs were intersected with immune -related genes (IRGs) from the ImmPort database to obtain PLC -related IRGs. The method of constructing a prognostic model through immune -related gene pairs (IRGPs) is used to obtain IRGPs and conduct the selection of central immune genes. The central immune genes obtained from the selection of IRGPs are validated in PLC. Subsequently, the relative proportions of 22 types of immune cells in different immune risk groups are evaluated, and the differential characteristics of PLC -related immune cells are verified through animal experiments. Results: Through database screening and the construction of an IRGP prognosis model, 84 pairs of IRGPs ( P < 0.001) were ultimately obtained. Analysis of these 84 IRGPs revealed 11 central immune genes related to PLC, showing differential expression in liver cancer tissues compared to normal liver tissues. Results from the CiberSort platform indicate differential expression of immune cells such as naive B cells, macrophages, and neutrophils in different immune risk groups. Animal experiments demonstrated altered immune cell proportions in H22 tumor -bearing mice, validating findings from peripheral blood and spleen homogenate analyses. Conclusion: Our study successfully predicted and validated PLC -related IRGs and immune cells, suggesting their potential as prognostic indicators and therapeutic targets for PLC.
引用
收藏
页数:19
相关论文
共 50 条
  • [41] Mitochondria-related chemoradiotherapy resistance genes-based machine learning model associated with immune cell infiltration on the prognosis of esophageal cancer and its value in pan-cancer
    Liu, Ziyu
    Zeinalzadeh, Zahra
    Huang, Tao
    Han, Yingying
    Peng, Lushan
    Wang, Dan
    Zhou, Zongjiang
    Ousmane, Diabate
    Wang, Junpu
    TRANSLATIONAL ONCOLOGY, 2024, 42
  • [42] Development and validation of an Immune-related Gene-based model for predicting prognosis and immunotherapy outcomes in hepatocellular carcinoma patients
    You, Penghui
    Liu, Xiaoling
    Wang, Min
    Zhan, Yanbing
    Chen, Lihong
    Chen, Yi
    SCIENTIFIC REPORTS, 2025, 15 (01):
  • [43] Identification and Validation of a Six Immune-Related Genes Signature for Predicting Prognosis in Patients With Stage II Colorectal Cancer
    Li, Xianzhe
    Xie, Minghao
    Yin, Shi
    Xiong, Zhizhong
    Mao, Chaobin
    Zhang, Fengxiang
    Chen, Huaxian
    Jin, Longyang
    Lan, Ping
    Lian, Lei
    FRONTIERS IN GENETICS, 2021, 12
  • [44] Construction of a Risk Model for Colon Cancer Prognosis Based on Ubiquitin-Related Genes
    Hu, Biwen
    Chen, Zhenwei
    Yao, Fei
    Li, Buzhuo
    TURKISH JOURNAL OF GASTROENTEROLOGY, 2023, 34 (05): : 449 - +
  • [45] A novel immune-related long noncoding RNA (lncRNA) pair model to predict the prognosis of triple-negative breast cancer
    Li, Jing-Ying
    Hu, Chen-Ji
    Peng, Hui
    Chen, En-Qiang
    TRANSLATIONAL CANCER RESEARCH, 2024, 13 (03) : 1252 - 1267
  • [46] Model constructions of chemosensitivity and prognosis of high grade serous ovarian cancer based on evaluation of immune microenvironment and immune response
    Zhang, Han
    Wu, Yijun
    Li, Hao
    Sun, Liping
    Meng, Xiangkai
    CANCER CELL INTERNATIONAL, 2021, 21 (01)
  • [47] Development and Validation of a Carbohydrate Metabolism-Related Model for Predicting Prognosis and Immune Landscape in Hepatocellular Carcinoma Patients
    Huang, Hong-xiang
    Zhong, Pei-yuan
    Li, Ping
    Peng, Su-juan
    Ding, Xin-jing
    Cai, Xiang-lian
    Chen, Jin-hong
    Zhu, Xie
    Lu, Zhi-hui
    Tao, Xing-yu
    Liu, Yang-yang
    Chen, Li
    CURRENT MEDICAL SCIENCE, 2024, 44 (04) : 771 - 788
  • [48] Cuproptosis-related gene DLAT is a biomarker of the prognosis and immune microenvironment of gastric cancer and affects the invasion and migration of cells
    Peng, Yanyu
    Shi, Ruimeng
    Yang, Siwen
    Zhu, Jiayi
    CANCER MEDICINE, 2024, 13 (14):
  • [49] A novel signature based on cancer-associated fibroblast genes to predict prognosis, immune feature, and therapeutic response in breast cancer
    Wang, Yichen
    Lv, Wenchang
    Yi, Yi
    Zhang, Qi
    Zhang, Jun
    Wu, Yiping
    AGING-US, 2023, 15 (09): : 3480 - 3497
  • [50] Construction and validation of an immune-related genes prognostic index (IRGPI) model in colon cancer
    Jin, Yabin
    Deng, Jianzhong
    Luo, Bing
    Zhong, Yubo
    Yu, Si
    FRONTIERS IN ENDOCRINOLOGY, 2022, 13