Rotational Dynamics of Water near Osmolytes by Molecular Dynamics Simulations

被引:1
|
作者
Higuchi, Yuji [1 ]
Abu Saleh, Md. [2 ]
Anada, Takahisa [2 ,3 ]
Tanaka, Masaru [2 ,3 ]
Hishida, Mafumi [4 ]
机构
[1] Kyushu Univ, Res Inst Informat Technol, Fukuoka 8190395, Japan
[2] Kyushu Univ, Grad Sch Engn, Dept Appl Chem, Fukuoka 8190395, Japan
[3] Kyushu Univ, Inst Mat Chem & Engn, Fukuoka 8190395, Japan
[4] Tokyo Univ Sci, Fac Sci, Dept Chem, Tokyo 1628601, Japan
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2024年 / 128卷 / 20期
基金
日本学术振兴会;
关键词
HYDROGEN-BONDS; LIQUID WATER; PROTEIN; HYDRATION; MECHANISM; DFTB3; SHELL;
D O I
10.1021/acs.jpcb.3c08470
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The behavior of water molecules around organic molecules has attracted considerable attention as a crucial factor influencing the properties and functions of soft matter and biomolecules. Recently, it has been suggested that the change in protein stability upon the addition of small organic molecules (osmolytes) is dominated by the change in the water dynamics caused by the osmolyte, where the dynamics of not only the directly interacting water molecules but also the long-range hydration layer affect the protein stability. However, the relation between the long-range structure of hydration water in various solutions and the water dynamics remains unclear at the molecular level. We performed density-functional tight-binding molecular dynamics simulations to elucidate the varying rotational dynamics of water molecules in 15 osmolyte solutions. A positive correlation was observed between the rotational relaxation time and our proposed normalized parameter obtained by dividing the number of hydrogen bonds between water molecules by the number of nearest-neighbor water molecules. For the 15 osmolyte solutions, an increase or a decrease in the value of the normalized parameter for the second hydration shell tended to result in water molecules with slow and fast rotational dynamics, respectively, thus illustrating the importance of the second hydration shell for the rotational dynamics of water molecules. Our simulation results are anticipated to advance the current understanding of water dynamics around organic molecules and the long-range structure of water molecules.
引用
收藏
页码:5008 / 5017
页数:10
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