Unveiling the tyrosinase inhibitory potential of phenolics from Centaurium spicatum: Bridging in silico and in vitro perspectives

被引:32
作者
Alruhaimi, Reem S. [1 ]
Mahmoud, Ayman M. [2 ,3 ]
Elbagory, Ibrahim [4 ]
Ahmeda, Ahmad F. [5 ,6 ]
El-Bassuony, Ashraf A. [7 ]
Lamsabhi, Al Mokhtar [8 ,9 ]
Kamel, Emadeldin M. [7 ]
机构
[1] Princess Nourah Bint Abdulrahman Univ, Coll Sci, Dept Biol, Riyadh 11671, Saudi Arabia
[2] Manchester Metropolitan Univ, Fac Sci & Engn, Dept Life Sci, Manchester M1 5GD, England
[3] Beni Suef Univ, Fac Sci, Zool Dept, Mol Physiol Div, Bani Suwayf 62514, Egypt
[4] Northern Border Univ, Fac Pharm, Dept Pharmaceut, Rafha 76321, Saudi Arabia
[5] Ajman Univ, Coll Med, Dept Basic Med Sci, Ajman 346, U Arab Emirates
[6] Ajman Univ, Ctr Med & Bioallied Hlth Sci Res, Ajman 346, U Arab Emirates
[7] Beni Suef Univ, Fac Sci, Organ Chem Dept, Bani Suwayf 62514, Egypt
[8] Univ Autonoma Madrid, Dept Quim, Campus Excelencia UAM CSIC Cantoblanco, Modulo 13, Madrid 28049, Spain
[9] Univ Autonoma Madrid, Inst Adv Res Chem Sci IAdChem, Madrid 28049, Spain
关键词
Tyrosinase; Centaurium spicatum; Molecular docking; Molecular dynamics simulations; Phenolic compounds; ANTIOXIDANT ACTIVITY; DYNAMICS; IDENTIFICATION; EFFICIENT; EXTRACTS; SPEED;
D O I
10.1016/j.bioorg.2024.107397
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phenolics, abundant in plants, constitute a significant portion of phytoconstituents consumed in the human diet. The phytochemical screening of the aerial parts of Centaurium spicatum led to the isolation of five phenolics. The anti-tyrosinase activities of the isolated compounds were assessed through a combination of in vitro experiments and multiple in silico approaches. Docking and molecular dynamics (MD) simulation techniques were utilized to figure out the binding interactions of the isolated phytochemicals with tyrosinase. The findings from molecular docking analysis revealed that the isolated phenolics were able to bind effectively to tyrosinase and potentially inhibit substrate binding, consequently diminishing the catalytic activity of tyrosinase. Among isolated compounds, cichoric acid displayed the lowest binding energy and the highest extent of polar interactions with the target enzyme. Analysis of MD simulation trajectories indicated that equilibrium was reached within 30 ns for all complexes of tyrosinase with the isolated phenolics. Among the five ligands studied, cichoric acid exhibited the lowest interaction energies, rendering its complex with tyrosinase the most stable. Considering these collective findings, cichoric acid emerges as a promising candidate for the design and development of a potential tyrosinase inhibitor. Furthermore, the in vitro anti-tyrosinase activity assay unveiled significant variations among the isolated compounds. Notably, cichoric acid exhibited the most potent inhibitory effect, as evidenced by the lowest IC50 value (7.92 +/- 1.32 mu g/ml), followed by isorhamnetin and gentiopicrin. In contrast, sinapic acid demonstrated the least inhibitory activity against tyrosinase, with the highest IC50 value. Moreover, cichoric acid exhibited a mixed inhibition mode against the hydrolysis of L-DOPA catalyzed by tyrosinase, with Ki value of 1.64. Remarkably, these experimental findings align well with the outcomes of docking and MD simulations, underscoring the consistency and reliability of our computational predictions with the actual inhibitory potential observed in vitro.
引用
收藏
页数:15
相关论文
共 43 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]  
Alam Nuhu, 2010, Mycobiology, V38, P295, DOI 10.4489/MYCO.2010.38.4.295
[3]   The melatonin receptor agonist agomelatine protects against acute pancreatitis induced by cadmium by attenuating inflammation and oxidative stress and modulating Nrf2/HO-1 pathway [J].
Alruhaimi, Reem S. ;
Hassanein, Emad H. M. ;
Abd El-Aziz, Mostafa K. ;
Abduh, Maisa Siddiq ;
Bin-Ammar, Albandari ;
Kamel, Emadeldin M. ;
Mahmoud, Ayman M. .
INTERNATIONAL IMMUNOPHARMACOLOGY, 2023, 124
[4]   A flavonoid-rich fraction of Euphorbia peplus attenuates hyperglycemia, insulin resistance, and oxidative stress in a type 2 diabetes rat model [J].
Alruhaimi, Reem S. ;
Mostafa-Hedeab, Gomaa ;
Abduh, Maisa Siddiq ;
Bin-Ammar, Albandari ;
Hassanein, Emad H. M. ;
Kamel, Emadeldin M. ;
Mahmoud, Ayman M. .
FRONTIERS IN PHARMACOLOGY, 2023, 14
[5]  
Bauer P., 2022, GROMACS 2022.4 Manual
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]   Solvent System-Guided Extraction of Centaurium spicatum (L.) Fritch Provides Optimized Conditions for the Biological and Chemical Characteristics of the Herbal Extracts [J].
Bozunovic, Jelena ;
Ivanov, Marija ;
Petrovic, Jovana ;
Gasic, Uros ;
Nakarada, Dura ;
Milutinovic, Milica ;
Anicic, Neda ;
Giba, Zlatko ;
Misic, Danijela ;
Stojkovic, Dejan .
PHARMACEUTICALS, 2023, 16 (02)
[9]   Preparative Isolation of Isorhamnetin from Stigma Maydis using High Speed Countercurrent Chromatography [J].
Cao, Xiaoying ;
Wei, Yun ;
Ito, Yoichiro .
JOURNAL OF LIQUID CHROMATOGRAPHY & RELATED TECHNOLOGIES, 2009, 32 (02) :273-280
[10]   Phenolic compounds from Ficus hispida L.f. as tyrosinase and melanin inhibitors: Biological evaluation, molecular docking, and molecular dynamics [J].
Cheng, Jia Xin ;
Li, Yu Qi ;
Cai, Jing ;
Zhang, Chao Feng ;
Akihisa, Toshihiro ;
Li, Wei ;
Kikuchi, Takashi ;
Liu, Wen Yuan ;
Feng, Feng ;
Zhang, Jie .
JOURNAL OF MOLECULAR STRUCTURE, 2021, 1244