Unraveling the interaction mechanism between orphan drug Nitisinone and bovine serum albumin through spectroscopic and in silico approaches

被引:1
作者
Bilkay, Mehmetcan [1 ]
Yazici, Sule [1 ]
Erkmen, Cem [2 ]
Celik, Ismail [3 ]
Kara, Hayriye Eda Satana [1 ]
机构
[1] Gazi Univ, Fac Pharm, Dept Analyt Chem, TR-06330 Ankara, Turkiye
[2] Istanbul Aydin Univ, Fac Pharm, Dept Analyt Chem, TR-34295 Istanbul, Turkiye
[3] Erciyes Univ, Fac Pharm, Dept Pharmaceut Chem, TR-38039 Kayseri, Turkiye
关键词
Bovine serum albumin; Fluorescence spectroscopy; Molecular docking; Nitisinone; Orphan drug; MOLECULAR DOCKING; ENZYMATIC-PROPERTIES; PRACTICAL ASPECTS; ANTICANCER DRUG; FLUORESCENCE; BINDING; ACID; STABILITY; RESONANCE;
D O I
10.1016/j.saa.2024.124818
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
The interaction between Nitisinone (NTBC) and bovine serum albumin (BSA) as the transport protein in a circulating system was investigated for the first time utilizing various analytical (UV-Vis spectrophotometry, fluorescence spectroscopy, dynamic light scattering, and differential scanning calorimetry) and computational (molecular docking and molecular dynamics simulations) methods. The BSA fluorescence intensity was quenched upon interaction with NTBC, and the quenching mechanism was observed as static. The interaction between NTBC and BSA was examined at 288 K, 298 K, and 308 K where the binding constants were found to be 1.44 x 105 f 0.22 M- 1, 5.18 x 104 f 0.20 M- 1, and 3.02 x 104 f 0.22 M- 1 respectively, suggesting an intermediate binding affinity between NTBC and BSA. Changes in the microenvironment surrounding tryptophan and tyrosine residues of BSA were elucidated using 3-D fluorescence spectroscopy. Thermodynamic studies revealed the calculated values of Delta H = - 54.34 f 5 kJ/mol and Delta S = - 0.0908 f 0.24 kJ/mol K- 1, indicating the involvement of van der Waals forces and hydrogen bonds in the interaction between NTBC and BSA. Moreover, the interaction's spontaneous nature was evidenced by negative Delta G values across all temperatures. Using dynamic light scattering, it was observed that higher NTBC concentrations led to a gradual rise in hydrodynamic diameter and notable aggregation of the NTBC-BSA complex. Moreover, changing signal values and shifted peaks of BSA, NTBC, and complex in differential scanning calorimetry curves, meant there were molecular interactions between the NTBC and BSA. In silico approaches also elucidated how NTBC binds to active sites on BSA, further supporting other findings. Moreover, molecular docking studies offer a more profound insight into the changing dynamics of hydrophobic, hydrogen, and halogen bonding involved in stabilizing the NTBC-BSA complex.
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页数:13
相关论文
共 63 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   Insight into the interaction of antitubercular and anticancer compound clofazimine with human serum albumin: spectroscopy and molecular modelling [J].
Ajmal, Mohammad Rehan ;
Zaidi, Nida ;
Alam, Parvez ;
Nusrat, Saima ;
Siddiqi, Mohd Khursheed ;
Badr, Gamal ;
Mahmoud, Mohamed H. ;
Khan, Rizwan Hasan .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2017, 35 (01) :46-57
[3]   Spectroscopic and computational approaches to investigate the binding mechanism of multi-purpose dye pararosaniline with serum albumin protein [J].
Arsha, P. ;
Gopi, Priyanka ;
Rani, Majji Sai Sudha ;
Shankar, Manwi ;
Pandya, Prateek .
JOURNAL OF MOLECULAR LIQUIDS, 2024, 394
[4]   LC-MS/MS study of the degradation processes of nitisinone and its by-products [J].
Barchanska, Hanna ;
Rola, Rafal ;
Szczepankiewicz, Wojciech ;
Mrachacz, Marta .
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 2019, 171 :15-21
[5]   Fluorometric determination of ornidazole by using BSA coated copper nanoclusters as a novel turn off sensor [J].
Bilkay, Mehmetcan ;
Satana Kara, Hayriye Eda .
TURKISH JOURNAL OF CHEMISTRY, 2022, 46 (02) :475-+
[6]  
Caglayan MG, 2015, ANAL METHODS-UK, V7, P1407, DOI [10.1039/C4AY02957G, 10.1039/c4ay02957g]
[7]  
CARTER DC, 1994, ADV PROTEIN CHEM, V45, P153
[8]  
Corso G., DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
[9]   Characterization of the interaction between 2′-deoxyuridine and human serum albumin [J].
Cui, Fengling ;
Yan, Yinghua ;
Zhang, Qiangzhai ;
Du, Juan ;
Yao, Xiaojun ;
Qu, Guirong ;
Lu, Yan .
CARBOHYDRATE RESEARCH, 2009, 344 (05) :642-647
[10]   Interaction of citalopram and escitalopram with calf Thymus DNA: A spectrofluorometric, voltammetric, and liquid chromatographic approach [J].
Dindar, Cigdem Kanbes ;
Erkmen, Cem ;
Yildirim, Sercan ;
Bozal-Palabiyik, Burcin ;
Uslu, Bengi .
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 2021, 195