Revealing elusive conformations of sucrose from hydrogen bond J-coupling in H2O: A combined NMR and quantum mechanics study

被引:0
作者
Kwon, Jeahoo [1 ]
Reeves, Hannah L. [2 ]
Wang, Lee-Ping [2 ]
Freedberg, Daron I. [1 ]
机构
[1] US FDA, Lab Bacterial Polysaccharides, Div Bacterial Parasit & Allergen Prod, Off Vaccines Res & Review,Ctr Biol Evaluat & Res, 10903 New Hampshire Ave, Silver Spring, MD 20993 USA
[2] Univ Calif Davis, Dept Chem, Davis, CA USA
基金
美国国家卫生研究院;
关键词
carbohydrate NMR; conformational flexibility; DFT calculations; DFT J-couplings; glycan NMR; hydrogen bond J-couplings; hydrogen bonding in glycans; OH hydrogen bonds; quantum mechanical calculations; sucrose; DENSITY-FUNCTIONAL THEORY; HYDROXYL PROTONS; AQUEOUS-SOLUTION; CONSTANTS; CRYSTAL; WATER; HSQC; DFT; DIFFRACTION; OLIGOSACCHARIDES;
D O I
10.1002/MRC.5473
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Hydrogen bonding is a crucial feature of biomolecules, but its characterization in glycans dissolved in aqueous solutions is challenging due to rapid hydrogen exchange between hydroxyl groups and H2O. In principle, the scalar (J) coupling constant can reveal the relative orientation of the atoms in the molecule. In contrast to J-coupling through H-bonds reported in proteins and nucleic acids, research on J-coupling through H-bonds in glycans dissolved in water is lacking. Here, we use sucrose as a model system for H-bonding studies; its structure, which consists of glucose (Glc) and fructose (Frc), is well-studied, and it is readily available. We apply the in-phase, antiphase-HSQC-TOCSY and quantify previously unreported through H-bond J-values for Frc-OH1-Glc-OH2 in H2O. While earlier reports of Brown and Levy indicate this H-bond as having only a single direction, our reported findings indicate the potential presence of two involving these same atoms, namely, G2OH -> F1O and F1OH -> G2O (where F and G stand for Frc and Glc, respectively). The calculated density functional theory J-values for the G2OH -> F1O agree with the experimental values. Additionally, we detected four other possible H-bonds in sucrose, which require different phi, psi (phi, psi) torsion angles. The phi, psi values are consistent with previous predictions of du Penhoat et al. and Venable et al. Our results will provide new insights into the molecular structure of sucrose and its interactions with proteins.
引用
收藏
页码:742 / 753
页数:12
相关论文
共 91 条
[1]   OBSERVATION OF HYDROXYL PROTONS OF SUCROSE IN AQUEOUS-SOLUTION - NO EVIDENCE FOR PERSISTENT INTRAMOLECULAR HYDROGEN-BONDS [J].
ADAMS, B ;
LERNER, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (12) :4827-4829
[2]   Shortfall of B3LYP in Reproducing NMR JCH Couplings in Some Isomeric Epoxy Structures with Strong Stereoelectronic Effects: A Benchmark Study on DFT Functionals [J].
Adamson, Jasper ;
Nazarski, Ryszard B. ;
Jarvet, Juri ;
Pehk, Tonis ;
Aav, Riina .
CHEMPHYSCHEM, 2018, 19 (05) :631-642
[3]   Review on DFT and ab initio calculations of scalar coupling constants [J].
Alkorta, I ;
Elguero, J .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2003, 4 (03) :64-92
[4]   Quantum-Chemical Simulation of 1H NMR Spectra. 2. Comparison of DFT-Based Procedures for Computing Proton-Proton Coupling Constants in Organic Molecules [J].
Bally, Thomas ;
Rablen, Paul R. .
JOURNAL OF ORGANIC CHEMISTRY, 2011, 76 (12) :4818-4830
[5]   Heteronuclear coupling constants of hydroxyl protons in a water solution of oligosaccharides:: trehalose and sucrose [J].
Batta, G ;
Kövér, KE .
CARBOHYDRATE RESEARCH, 1999, 320 (3-4) :267-272
[6]   Direct Evidence for Hydrogen Bonding in Glycans: A Combined NMR and Molecular Dynamics Study [J].
Battistel, Marcos D. ;
Pendrill, Robert ;
Widmalm, Goeran ;
Freedberg, Daron I. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (17) :4860-4869
[7]   THE CONFORMATIONAL PROPERTIES OF SUCROSE IN AQUEOUS-SOLUTION - INTRAMOLECULAR HYDROGEN-BONDING [J].
BOCK, K ;
LEMIEUX, RU .
CARBOHYDRATE RESEARCH, 1982, 100 (MAR) :63-74
[8]   FURTHER REFINEMENT OF STRUCTURE OF SUCROSE BASED ON NEUTRON-DIFFRACTION DATA [J].
BROWN, GM ;
LEVY, HA .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1973, B 29 (APR15) :790-797
[9]   SUCROSE - PRECISE DETERMINATION OF CRYSTAL AND MOLECULAR STRUCTURE BY NEUTRON DIFFRACTION [J].
BROWN, GM ;
LEVY, HA .
SCIENCE, 1963, 141 (358) :921-&
[10]   Static and dynamic effects on vicinal scalar J couplings in proteins and peptides:: A MD/DFT analysis [J].
Case, DA ;
Scheurer, C ;
Brüschweiler, R .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (42) :10390-10397