Sample-Optimal Low-Rank Approximation of Distance Matrices

A distance matrix A is an element of R-nxm represents all pairwise distances, A(ij) = d(x(i), y(j)), between two point sets x(1), ..., x(n) and y(1) ... y(m) in an arbitrary metric space (Z, d). Such matrices arise in various computational contexts such as learning image manifolds, handwriting recognition, and multi-dimensional unfolding. In this work we study algorithms for low-rank approximation of distance matrices. Recent work by Bakshi and Woodruff (NeurIPS 2018) showed it is possible to compute a rank-k approximation of a distance matrix in time O((n + m)(1+gamma)) center dot poly (k, 1/epsilon), where epsilon > 0 is an error parameter and gamma > 0 is an arbitrarily small constant. Notably, their bound is sublinear in the matrix size, which is unachievable for general matrices. We present an algorithm that is both simpler and more efficient. It reads only O((n + m)k/epsilon) entries of the input matrix, and has a running time of O(n + m) center dot poly (k, 1/epsilon). We complement the sample complexity of our algorithm with a matching lower bound on the number of entries that must be read by any algorithm. We provide experimental results to validate the approximation quality and running time of our algorithm.