A hybrid multi-objective genetic algorithm for gene selection in microarray data

被引:0
作者
Su, Yizhou [1 ]
Zhao, Guohua [2 ]
Lin, Yusong [3 ,4 ,5 ]
机构
[1] Zhengzhou Univ, Sch Comp & Artificial Intelligence, Zhengzhou, Peoples R China
[2] Zhengzhou Univ, Affiliated Hosp 1, Dept Magnet Resonance Imaging, Zhengzhou, Peoples R China
[3] Zhengzhou Univ, Sch Cyber Sci & Engn, Zhengzhou, Peoples R China
[4] Zhengzhou Univ, Collaborat Innovat Ctr Internet Healthcare, Zhengzhou, Peoples R China
[5] Zhengzhou Univ, Hanwei IoT Inst, Zhengzhou, Peoples R China
来源
PROCEEDINGS OF 2023 4TH INTERNATIONAL SYMPOSIUM ON ARTIFICIAL INTELLIGENCE FOR MEDICINE SCIENCE, ISAIMS 2023 | 2023年
基金
中国国家自然科学基金;
关键词
Feature selection; Gene selection; Multi-objective optimization; Genetic algorithm;
D O I
10.1145/3644116.3644190
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
The classification of microarray data is crucial for cancer diagnosis and prognosis. However, the high dimensionality of gene microarray data often leads to suboptimal classification performance. Furthermore, only a small subset of genes in vast datasets significantly contributes to accurate disease classification, emphasizing the importance of feature selection in this domain. This study introduces a novel hybrid feature selection method, denoted as the Maximum Relevance Non-Dominated Sorting Genetic Algorithm (MRNSGA). This approach makes use of gene-gene correlations and redundancies to facilitate the initialization of the genetic algorithm population. Additionally, a mutation retry operator is incorporated into the genetic algorithm to enhance its performance. The proposed method is compared with other advanced evolutionary algorithms across 15 gene microarray datasets. The results show that our algorithm significantly improves gene classification accuracy and considerably reduces the time required for feature selection.
引用
收藏
页码:443 / 449
页数:7
相关论文
共 13 条
[1]  
Al-Sahaf H, 2015, IEEE C EVOL COMPUTAT, P2460, DOI 10.1109/CEC.2015.7257190
[2]   Tissue classification with gene expression profiles [J].
Ben-Dor, A ;
Bruhn, L ;
Friedman, N ;
Nachman, I ;
Schummer, M ;
Yakhini, Z .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (3-4) :559-583
[3]   An Evolutionary Many-Objective Optimization Algorithm Using Reference-Point-Based Nondominated Sorting Approach, Part I: Solving Problems With Box Constraints [J].
Deb, Kalyanmoy ;
Jain, Himanshu .
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2014, 18 (04) :577-601
[4]  
Jiao R, 2023, IEEE Trans Evol Comput
[5]   An efficient multivariate feature ranking method for gene selection in high-dimensional microarray data [J].
Lee, Junghye ;
Choi, In Young ;
Jun, Chi-Hyuck .
EXPERT SYSTEMS WITH APPLICATIONS, 2021, 166
[6]   Mining gene expression data using data mining techniques : A critical review [J].
Mabu, Audu Musa ;
Prasad, Rajesh ;
Yadav, Raghav .
JOURNAL OF INFORMATION & OPTIMIZATION SCIENCES, 2020, 41 (03) :723-742
[7]   Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy [J].
Peng, HC ;
Long, FH ;
Ding, C .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2005, 27 (08) :1226-1238
[8]   Gene selection for microarray data classification via multi-objective graph theoretic-based method [J].
Rostami, Mehrdad ;
Forouzandeh, Saman ;
Berahmand, Kamal ;
Soltani, Mina ;
Shahsavari, Meisam ;
Oussalah, Mourad .
ARTIFICIAL INTELLIGENCE IN MEDICINE, 2022, 123
[9]   Variable-Length Particle Swarm Optimization for Feature Selection on High-Dimensional Classification [J].
Tran, Binh ;
Xue, Bing ;
Zhang, Mengjie .
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2019, 23 (03) :473-487
[10]   A New Representation in PSO for Discretization-Based Feature Selection [J].
Tran, Binh ;
Xue, Bing ;
Zhang, Mengjie .
IEEE TRANSACTIONS ON CYBERNETICS, 2018, 48 (06) :1733-1746