Physics-informed deep generative learning for quantitative assessment of the retina

被引:7
作者
Brown, Emmeline E. [1 ,2 ]
Guy, Andrew A. [1 ,3 ]
Holroyd, Natalie A. [1 ]
Sweeney, Paul W. [4 ]
Gourmet, Lucie [1 ]
Coleman, Hannah [1 ]
Walsh, Claire [1 ,5 ]
Markaki, Athina E. [3 ]
Shipley, Rebecca [1 ,5 ]
Rajendram, Ranjan [2 ,6 ]
Walker-Samuel, Simon [1 ]
机构
[1] UCL, Ctr Computat Med, London, England
[2] Moorfields Eye Hosp, London, England
[3] Univ Cambridge, Dept Engn, Cambridge, England
[4] Univ Cambridge, Canc Res UK Cambridge Inst, Cambridge, England
[5] UCL, Dept Mech Engn, London, England
[6] UCL, Inst Ophthalmol, London, England
基金
英国工程与自然科学研究理事会;
关键词
BLOOD-VESSELS; SEGMENTATION; HEALTHY; DIAMETERS; MODELS; IMAGES; FLOW;
D O I
10.1038/s41467-024-50911-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Disruption of retinal vasculature is linked to various diseases, including diabetic retinopathy and macular degeneration, leading to vision loss. We present here a novel algorithmic approach that generates highly realistic digital models of human retinal blood vessels, based on established biophysical principles, including fully-connected arterial and venous trees with a single inlet and outlet. This approach, using physics-informed generative adversarial networks (PI-GAN), enables the segmentation and reconstruction of blood vessel networks with no human input and which out-performs human labelling. Segmentation of DRIVE and STARE retina photograph datasets provided near state-of-the-art vessel segmentation, with training on only a small (n = 100) simulated dataset. Our findings highlight the potential of PI-GAN for accurate retinal vasculature characterization, with implications for improving early disease detection, monitoring disease progression, and improving patient care. Analysis of retinal vasculature is limited by the availability of annotated datasets. Here, the authors show a method for generating synthetic retinal vessel data which is not statistically significantly different from real clinical data.
引用
收藏
页数:14
相关论文
共 72 条
[61]   Diabetic retinopathy: global prevalence, major risk factors, screening practices and public health challenges: a review [J].
Ting, Daniel Shu Wei ;
Cheung, Gemmy Chui Ming ;
Wong, Tien Yin .
CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2016, 44 (04) :260-277
[62]   Vascular Changes in Intermediate Age-Related Macular Degeneration Quantified Using Optical Coherence Tomography Angiography [J].
Trinh, Matt ;
Kalloniatis, Michael ;
Nivison-Smith, Lisa .
TRANSLATIONAL VISION SCIENCE & TECHNOLOGY, 2019, 8 (04)
[63]   Comparative Multicentric Evaluation of Inter-Observer Variability in Manual and Automatic Segmentation of Neuroblastic Tumors in Magnetic Resonance Images [J].
Veiga-Canuto, Diana ;
Cerda-Alberich, Leonor ;
Nebot, Cinta Sanguesa ;
de Las Heras, Blanca Martinez ;
Potschger, Ulrike ;
Gabelloni, Michela ;
Carot Sierra, Jose Miguel ;
Taschner-Mandl, Sabine ;
Duster, Vanessa ;
Canete, Adela ;
Ladenstein, Ruth ;
Neri, Emanuele ;
Marti-Bonmati, Luis .
CANCERS, 2022, 14 (15)
[64]   Diabetic Retinopathy: Pathophysiology and Treatments [J].
Wang, Wei ;
Lo, Amy C. Y. .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (06)
[65]   Retinal vessel diameters and their associations with age and blood pressure [J].
Wong, TY ;
Klein, R ;
Klein, BEK ;
Meuer, SM ;
Hubbard, LD .
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2003, 44 (11) :4644-4650
[66]   World Medical Association Declaration of Helsinki Ethical Principles for Medical Research Involving Human Subjects [J].
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2013, 310 (20) :2191-2194
[67]   PHYSICS-INFORMED GENERATIVE ADVERSARIAL NETWORKS FOR STOCHASTIC DIFFERENTIAL EQUATIONS [J].
Yang, Liu ;
Zhang, Dongkun ;
Karniadakis, George Em .
SIAM JOURNAL ON SCIENTIFIC COMPUTING, 2020, 42 (01) :A292-A317
[68]   Early retinal microvascular abnormalities in patients with chronic kidney disease [J].
Yeung, Ling ;
Wu, I-Wen ;
Sun, Chi-Chin ;
Liu, Chun-Fu ;
Chen, Shin-Yi ;
Tseng, Chung-Hsin ;
Lee, Hsin-Chin ;
Lee, Chin-Chan .
MICROCIRCULATION, 2019, 26 (07)
[69]   CycleGAN-based deep learning technique for artifact reduction in fundus photography [J].
Yoo, Tae Keun ;
Choi, Joon Yul ;
Kim, Hong Kyu .
GRAEFES ARCHIVE FOR CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2020, 258 (08) :1631-1637
[70]   Supervised learning with cyclegan for low-dose FDG PET image denoising [J].
Zhou, Long ;
Schaefferkoetter, Joshua D. ;
Tham, Ivan W. K. ;
Huang, Gang ;
Yan, Jianhua .
MEDICAL IMAGE ANALYSIS, 2020, 65