Novel histone acetylation-related lncRNA signature for predicting prognosis and tumor microenvironment in esophageal carcinoma

被引:0
|
作者
Han, Batter [1 ]
Ma, Ying [2 ]
Yang, Pengjie [1 ]
Zhao, Fangchao [3 ]
Zhu, Haiyong [3 ]
Li, Shujun [3 ]
Yu, Rong [1 ]
Bao, Subudao [4 ]
机构
[1] Peking Univ, Canc Hosp, Inner Mongolia Hosp, Dept Thorac Surg, Hohhot 010010, Peoples R China
[2] Mongolia Med Univ, Dept Thorac Surg, Affiliated Hosp, Hohhot 010050, Peoples R China
[3] Hebei Med Univ, Hosp 2, Dept Thorac Surg, Shijiazhuang 050000, Peoples R China
[4] Inner Mongolia Med Univ, Mongolian Med Coll, Hohhot 010110, Peoples R China
来源
AGING-US | 2024年 / 16卷 / 06期
关键词
histone acetylation; esophageal carcinoma; tumor microenvironment; immunotherapy; CANCER; EPIGENETICS;
D O I
暂无
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Histone acetylation is one of the most common epigenetic modifications and plays a crucial role in tumorigenesis. However, the prognostic significance of histone acetylation-related lncRNAs (HARlncRNAs) in esophageal carcinoma (ESCA) is not well understood. A total of 653 differentially expressed lncRNAs (DElncRNAs) were identified between 162 ESCA tissues and 11 normal tissues in the TCGA database, and 7 of them were correlated with acetylation regulators. We employed univariate Cox regression analysis, combining it with clinical prognosis information, to select 3 prognostic-related HARlncRNAs for further analysis. Subsequently, we used LASSO regression analysis to construct a risk signature for ESCA and identified C21orf62-AS1 and SSTR5.AS1 as potential biomarkers for the prognosis of ESCA patients. Based on the risk score calculated using the risk signature, we categorized patients into high- and low-risk groups. We identified the risk score as an independent risk factor and validated it in the training, test, and GSE53624 datasets. Additionally, patients categorized by their risk scores exhibited distinct immune statuses, tumor mutation burdens, responses to immunotherapy, and drug sensitivities.
引用
收藏
页码:5163 / 5183
页数:21
相关论文
共 50 条
  • [1] Development and Validation of a Novel Histone Acetylation-Related Gene Signature for Predicting the Prognosis of Ovarian Cancer
    Dai, Qinjin
    Ye, Ying
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
  • [2] Construction and validation of a histone acetylation-related lncRNA prognosis signature for ovarian cancer
    Hu, Xiao-Qian
    Zhang, Xiao-Chong
    Li, Shao-Teng
    Hua, Tian
    FRONTIERS IN GENETICS, 2022, 13
  • [3] Histone acetylation-related IncRNA: Potential biomarkers for predicting prognosis and immune response in lung adenocarcinoma, and distinguishing hot and cold tumours
    Li, Rumeng
    Qiu, Tingting
    Zhou, Qiangqiang
    He, Fajian
    Jie, Chen
    Zheng, Xinyu
    Lu, Zeguang
    Wu, Qiuji
    Xie, Conghua
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [4] Ferroptosis-Related lncRNA Signature Correlates with the Prognosis, Tumor Microenvironment, and Therapeutic Sensitivity of Esophageal Squamous Cell Carcinoma
    Zhu, Jiahao
    Zhao, Yutian
    Wu, Gang
    Zhang, Xiaojun
    Chen, Qingqing
    Yang, Bo
    Guo, Xinwei
    Ji, Shengjun
    Gu, Ke
    OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2022, 2022
  • [5] A novel senescence-related lncRNA signature that predicts prognosis and the tumor microenvironment in patients with lung adenocarcinoma
    Fang, Xueying
    Huang, Enmin
    Xie, Xiaopeng
    Yang, Kai
    Wang, Shuqian
    Huang, Xiaoqing
    Song, Mei
    FRONTIERS IN GENETICS, 2022, 13
  • [6] A disulfidptosis-related lncRNA signature for analyzing tumor microenvironment and clinical prognosis in hepatocellular carcinoma
    Zheng, Haishui
    Cheng, Jigan
    Zhuang, Ziyun
    Li, Duguang
    Yang, Jing
    Yuan, Fan
    Fan, Xiaoxiao
    Liu, Xiaolong
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [7] Ferroptosis-related lncRNA signature predicts the prognosis and immune microenvironment of hepatocellular carcinoma
    Fang, Chongkai
    Liu, Silin
    Feng, Kunliang
    Huang, Chaoyuan
    Zhang, Ying
    Wang, Jinan
    Lin, Hongtong
    Wang, Junyan
    Zhong, Chong
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [8] A Novel TGF-β-Related Signature for Predicting Prognosis, Tumor Microenvironment, and Therapeutic Response in Colorectal Cancer
    Tao, Baorui
    Yi, Chenhe
    Ma, Yue
    Li, Yitong
    Zhang, Bo
    Geng, Yan
    Chen, Zhenmei
    Ma, Xiaochen
    Chen, Jinhong
    BIOCHEMICAL GENETICS, 2023, 62 (4) : 2999 - 3029
  • [9] Identifying a novel cuproptosis-related necroptosis gene subtype-related signature for predicting the prognosis, tumor microenvironment, and immunotherapy of hepatocellular carcinoma
    Shi, Yuanxin
    Qiu, Peng
    Zhao, Kai
    Li, Xiangyu
    Feng, Yunxiang
    Deng, Zhengdong
    Wang, Jianming
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 10
  • [10] Predicting prognosis and immunotherapy response among colorectal cancer patients based on a tumor immune microenvironment-related lncRNA signature
    Hu, Chuling
    Cai, Du
    Zhong, Min-Er
    Fan, Dejun
    Li, Cheng-Hang
    Lv, Min-Yi
    Huang, Ze-Ping
    Wang, Wei
    Wu, Xiao-Jian
    Gao, Feng
    FRONTIERS IN GENETICS, 2022, 13