In-vitro and in-silico analyses of the thrombolytic potential of green kiwifruit

被引:0
作者
Pinontoan, Reinhard [1 ]
Purnomo, Jonathan Suciono [1 ]
Avissa, Elvina Bella [1 ]
Tanojo, Jessica Pricilla [2 ]
Djuan, Moses [1 ]
Vidian, Valerie [1 ]
Samantha, Ariela [1 ]
Jo, Juandy [1 ,3 ]
Steven, Eden [2 ,4 ]
机构
[1] Univ Pelita Harapan, Dept Biol, Tangerang 15811, Indonesia
[2] Sekolah Pelita Harapan Lippo Village, Ctr Excellence Appl Sci Acad, Tangerang 15810, Indonesia
[3] Mochtar Riady Inst Nanotechnol, Tangerang 15810, Indonesia
[4] Emmerich Res Ctr, Jakarta 14450, Indonesia
关键词
Actinidin; Fibrinolytic activity; Green kiwifruit; Molecular docking; Molecular dynamics; Thrombolysis; PROTEIN; DOCKING; FRUITS;
D O I
10.1038/s41598-024-64160-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cardiovascular diseases (CVDs), mainly caused by thrombosis complications, are the leading cause of mortality worldwide, making the development of alternative treatments highly desirable. In this study, the thrombolytic potential of green kiwifruit (Actinidia deliciosa cultivar Hayward) was assessed using in-vitro and in-silico approaches. The crude green kiwifruit extract demonstrated the ability to reduce blood clots significantly by 73.0 +/- 1.12% (P<0.01) within 6 h, with rapid degradation of A alpha and B beta fibrin chains followed by the gamma chain in fibrinolytic assays. Molecular docking revealed six favorable conformations for the kiwifruit enzyme actinidin (ADHact) and fibrin chains, supported by spontaneous binding energies and distances. Moreover, molecular dynamics simulation confirmed the binding stability of the complexes of these conformations, as indicated by the stable binding affinity, high number of hydrogen bonds, and consistent distances between the catalytic residue Cys25 of ADHact and the peptide bond. The better overall binding affinity of ADHact to fibrin chains A alpha and B beta may contribute to their faster degradation, supporting the fibrinolytic results. In conclusion, this study demonstrated the thrombolytic potential of the green kiwifruit-derived enzyme and highlighted its potential role as a natural plant-based prophylactic and therapeutic agent for CVDs.
引用
收藏
页数:13
相关论文
共 60 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   Multisampling-based docking reveals Imidazolidinyl urea as a multitargeted inhibitor for lung cancer: an optimisation followed multi-simulation and in-vitro study [J].
Ahmad, Shaban ;
Singh, Vijay ;
Gautam, Hemant K. K. ;
Raza, Khalid .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (05) :2494-2511
[3]   Investigation of Potential Antioxidant, Thrombolytic and Neuropharmacological Activities of Homalomena aromatica Leaves Using Experimental and In Silico Approaches [J].
Ali, Md. Sekendar ;
Sayem, Syed Al Jawad ;
Habibullah ;
Quah, Yixian ;
Lee, Eon-Bee ;
Birhanu, Biruk Tesfaye ;
Suk, Kyoungho ;
Park, Seung-Chun .
MOLECULES, 2021, 26 (04)
[4]   Structures of the free and inhibitors-bound forms of bromelain and ananain from Ananas comosus stem and in vitro study of their cytotoxicity [J].
Azarkan, Mohamed ;
Maquoi, Erik ;
Delbrassine, Francois ;
Herman, Raphael ;
M'Rabet, Nasiha ;
Esposito, Rafaele Calvo ;
Charlier, Paulette ;
Kerff, Frederic .
SCIENTIFIC REPORTS, 2020, 10 (01)
[5]   Application of Plant Proteases in Meat Tenderization: Recent Trends and Future Prospects [J].
Azmi, Syahira Izyana Mohd ;
Kumar, Pavan ;
Sharma, Neelesh ;
Sazili, Awis Qurni ;
Lee, Sung-Jin ;
Ismail-Fitry, Mohammad Rashedi .
FOODS, 2023, 12 (06)
[6]  
Baig M. U., 2021, Thrombolytic therapy
[7]   STRUCTURE OF ACTINIDIN, AFTER REFINEMENT AT 1.7-A RESOLUTION [J].
BAKER, EN .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 141 (04) :441-484
[8]   Regulation of protein-ligand binding affinity by hydrogen bond pairing [J].
Chen, Deliang ;
Oezguen, Numan ;
Urvil, Petri ;
Ferguson, Colin ;
Dann, Sara M. ;
Savidge, Tor C. .
SCIENCE ADVANCES, 2016, 2 (03)
[9]   Effective management of atherosclerosis progress and hyperlipidemia with nattokinase: A clinical study with 1,062 participants [J].
Chen, Hongjie ;
Chen, Jiepeng ;
Zhang, Fuping ;
Li, Yuanhui ;
Wang, Ronghua ;
Zheng, Qiang ;
Zhang, Xu ;
Zeng, Jun ;
Xu, Feng ;
Lin, Yiguang .
FRONTIERS IN CARDIOVASCULAR MEDICINE, 2022, 9
[10]   Nattokinase: A Promising Alternative in Prevention and Treatment of Cardiovascular Diseases [J].
Chen, Hongjie ;
McGowan, Eileen M. ;
Ren, Nina ;
Lal, Sara ;
Nassif, Najah ;
Shad-Kaneez, Fatima ;
Qu, Xianqin ;
Lin, Yiguang .
BIOMARKER INSIGHTS, 2018, 13