Chromosome-level genome assembly and annotation of the cold-water species Ophiura sarsii

被引:1
作者
Han, Chen [1 ,2 ]
Zhang, Qian [2 ]
Li, Yixuan [3 ]
Sun, Yuyao [2 ]
Dong, Yue [2 ,4 ]
Ge, Meiling [2 ]
Li, Zhong [2 ,4 ]
Hu, Xuying [2 ]
Liu, Bing [2 ]
Zhang, Xuelei [2 ]
Wang, Zongling [1 ,2 ]
Xu, Qinzeng [2 ]
机构
[1] China Univ Geosci, Sch Ocean Sci, Beijing 100083, Peoples R China
[2] Minist Nat Resources, Inst Oceanog 1, Key Lab Marine Ecoenvironm Sci & Technol, Qingdao 266061, Peoples R China
[3] Hong Kong Baptist Univ, Fac Sci, Hong Kong, Peoples R China
[4] Ocean Univ China, Coll Environm Sci & Engn, Qingdao 266100, Peoples R China
基金
中国国家自然科学基金;
关键词
HI-C; SYSTEM; RECONSTRUCTION; PREDICTION; STRINGTIE; ALIGNMENT; PROVIDES; PROGRAM; INDEXES; FINDER;
D O I
10.1038/s41597-024-03412-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The cold-water species Ophiura sarsii, a brittle star, is a key echinoderm in the Arctic continental shelf region, highly sensitive to climate change. However, the absence of a high-quality genome has hindered a thorough understanding of its adaptive evolution. In this study, we reported the first chromosome-level genome assembly of O. sarsii. The genome assembly totalled 1.57 Gb, encompassing 19 chromosomes with a GC content of 37.11% and a scaffold N50 length of 78.03 Mb. The Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment yielded a completeness estimate of 93.5% for this assembly. We predicted a total of 27,099 protein-coding genes, with 25,079 functionally annotated. The genome was comprised of 58.09% transposable elements. This chromosome-level genome of O. sarsii contributes to our understanding of the origin and evolution of marine organisms.
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页数:9
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