Genome-Wide Identification and Expression Analysis of YTH Gene Family for Abiotic Stress Regulation in Camellia chekiangoleosa

被引:4
|
作者
Cheng, Xiang [1 ,2 ,3 ]
Yao, Sheng [1 ,2 ,3 ]
Zhang, Jingjing [1 ,2 ,3 ]
Wang, Dengbao [1 ,2 ,3 ]
Xu, Shaojun [1 ,2 ,3 ]
Yu, Qiong [1 ,2 ,3 ]
Ji, Kongshu [1 ,2 ,3 ]
机构
[1] Nanjing Forestry Univ, State Key Lab Tree Genet & Breeding, Nanjing 210037, Peoples R China
[2] Natl Forestry & Grassland Adm, Key Open Lab Forest Genet & Gene Engn, Nanjing 210037, Peoples R China
[3] Nanjing Forestry Univ, Coinnovat Ctr Sustainable Forestry Southern China, Nanjing 210037, Peoples R China
关键词
epitranscriptomics; Camellia chekiangoleosa Hu; YTH domain; expression profiling; RNA; BINDING; DOMAIN;
D O I
10.3390/ijms25073996
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
N-6-methyladenosine (m(6)A) is essential for RNA metabolism in cells. The YTH domain, conserved in the kingdom of Eukaryotes, acts as an m(6)A reader that binds m(6)A-containing RNA. In plants, the YTH domain is involved in plant hormone signaling, stress response regulation, RNA stability, translation, and differentiation. However, little is known about the YTH genes in tea-oil tree, which can produce edible oil with high nutritional value. This study aims to identify and characterize the YTH domains within the tea-oil tree (Camellia chekiangoleosa Hu) genome to predict their potential role in development and stress regulation. In this study, 10 members of the YTH family containing the YTH domain named CchYTH1-10 were identified from C. chekiangoleosa. Through analysis of their physical and chemical properties and prediction of subcellular localization, it is known that most family members are located in the nucleus and may have liquid-liquid phase separation. Analysis of cis-acting elements in the CchYTH promoter region revealed that these genes could be closely related to abiotic stress and hormones. The results of expression profiling show that the CchYTH genes were differentially expressed in different tissues, and their expression levels change under drought stress. Overall, these findings could provide a foundation for future research regarding CchYTHs in C. chekiangoleosa and enrich the world in terms of epigenetic mark m(6)A in forest trees.
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页数:16
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