MALDI glycotyping of O-antigens from a single colony of gram-negative bacteria

被引:5
作者
Urakami, Shogo [1 ]
Hinou, Hiroshi [1 ,2 ]
机构
[1] Hokkaido Univ, Grad Sch Life Sci, Lab Adv Chem Biol, Sapporo 0010021, Japan
[2] Hokkaido Univ, Fac Adv Life Sci, Frontier Res Ctr Adv Mat & Life Sci, Sapporo 0010021, Japan
基金
日本科学技术振兴机构; 日本学术振兴会;
关键词
O-antigen; Biotyping; LPS; MALDI; Glycotyping; Single colony; ESCHERICHIA-COLI; STRUCTURAL-CHARACTERIZATION; LIPOPOLYSACCHARIDE; POLYSACCHARIDE; IDENTIFICATION; TOF; GLYCAN; MS;
D O I
10.1038/s41598-024-62729-1
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Polypeptide-targeted MALDI-TOF MS for microbial species identification has revolutionized microbiology. However, no practical MALDI-TOF MS identification method for O-antigen polysaccharides, a major indicator for epidemiological classification within a species of gram-negative bacteria, is available. We describe a simple MALDI glycotyping method for O-antigens that simultaneously identifies the molecular mass of the repeating units and the monosaccharide composition of the O-antigen. We analyzed the Escherichia coli O1, O6, and O157-type strains. Conventional species identification based on polypeptide patterns and O-antigen polysaccharide typing can be performed in parallel from a single colony using our MALDI-TOF MS workflow. Moreover, subtyping within the same O-antigen and parallel colony-specific O-antigen determination from mixed strains, including the simultaneous identification of multiple strains-derived O-antigens within selected colony, were performed. In MALDI glycotyping of two Enterobacteriaceae strains, a Citrobacter freundii strain serologically cross-reactive with E. coli O157 gave a MALDI spectral pattern identical to E. coli O157. On the other hand, an Edwardsiella tarda strain with no reported O-antigen cross-reactivity gave a MALDI spectral pattern of unknown O-antigen repeating units. The method described in this study allows the parallel and rapid identification of microbial genera, species, and serotypes of surface polysaccharides using a single MALDI-TOF MS instrument.
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页数:11
相关论文
共 34 条
[1]   STRUCTURAL STUDIES OF THE ESCHERICHIA-COLI O1A O-POLYSACCHARIDE, USING THE COMPUTER-PROGRAM CASPER [J].
BAUMANN, H ;
JANSSON, PE ;
KENNE, L ;
WIDMALM, G .
CARBOHYDRATE RESEARCH, 1991, 211 (01) :183-190
[2]   The population genetics of pathogenicEscherichia coli [J].
Denamur, Erick ;
Clermont, Olivier ;
Bonacorsi, Stephane ;
Gordon, David .
NATURE REVIEWS MICROBIOLOGY, 2021, 19 (01) :37-54
[3]   The role of bacterial exopolysaccharides (EPS) in the synthesis of antimicrobial silver nanomaterials: A state-of-the-art review [J].
Dey, Gobinda ;
Patil, Maheshkumar Prakash ;
Banerjee, Aparna ;
Sharma, Raju Kumar ;
Banerjee, Pritam ;
Maity, Jyoti Prakash ;
Singha, Shuvendu ;
Taharia, Md. ;
Shaw, Arun Kumar ;
Huang, Hsien-Bin ;
Kim, Gun-Do ;
Chen, Chien-Yen .
JOURNAL OF MICROBIOLOGICAL METHODS, 2023, 212
[4]   Structural Study of the Lipopolysaccharide O-Antigen Produced by the Emerging Cystic Fibrosis Pathogen Pandoraea pulmonicola [J].
Di Lorenzo, Flaviana ;
Silipo, Alba ;
Costello, Anne ;
Sturiale, Luisa ;
Garozzo, Domenico ;
Callaghan, Maire ;
Lanzetta, Rosa ;
Parrilli, Michelangelo ;
McClean, Siobhan ;
Molinaro, Antonio .
EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 2012, 2012 (11) :2243-2249
[5]   FTIR-assisted MALDI-TOF MS for the identification and typing of bacteria [J].
Feng, Bin ;
Shi, Haimei ;
Xu, Fuxing ;
Hu, Fupin ;
He, Jian ;
Yang, Huayan ;
Ding, Chuanfan ;
Chen, Wenxiang ;
Yu, Shaoning .
ANALYTICA CHIMICA ACTA, 2020, 1111 :75-82
[6]   Rapid structural elucidation of polysaccharides employing predicted functions of glycosyltransferases and NMR data: Application to the O-antigen of Escherichia coli O59 [J].
Fontana, Carolina ;
Lundborg, Magnus ;
Weintraub, Andrej ;
Widmalm, Goran .
GLYCOBIOLOGY, 2014, 24 (05) :450-457
[7]   Structural characterization of the O-antigenic polysaccharide of the lipopolysaccharide from Rhizobium etli strain CE3 -: A unique O-acetylated glycan of discrete size, containing 3-O-methyl-6-deoxy-L-talose and 2,3,4-tri-O-methyl-L-fucose [J].
Forsberg, LS ;
Bhat, UR ;
Carlson, RW .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (25) :18851-18863
[8]   STRUCTURES OF THE 01B AND 01C LIPOPOLYSACCHARIDE ANTIGENS OF ESCHERICHIA-COLI [J].
GUPTA, DS ;
SHASHKOV, AS ;
JANN, B ;
JANN, K .
JOURNAL OF BACTERIOLOGY, 1992, 174 (24) :7963-7970
[10]   Insight into Glycan Diversity and Evolutionary Lineage Based on Comparative Avio-N-glycomics and Sialic Acid Analysis of 88 Egg Whites of Galloanserae [J].
Hirose, Kazuko ;
Amano, Maho ;
Hashimoto, Ryo ;
Lee, Yuan Chuan ;
Nishimura, Shin-Ichiro .
BIOCHEMISTRY, 2011, 50 (21) :4757-4774