Similarity score for screening phase-retrieved maps in X-ray diffraction imaging - characterization in reciprocal space

被引:6
作者
Takayama, Yuki [1 ,2 ,3 ,4 ]
Nakasakob, Masayoshi [2 ,5 ]
机构
[1] Univ Hyogo, Grad Sch Sci, 3-2-1 Kouto, Kamigori, Hyogo 6781297, Japan
[2] RIKEN SPring 8 Ctr, 1-1-1 Kouto, Sayo, Hyogo 6795148, Japan
[3] Hyogo Sci & Technol Assoc, Synchrotron Radiat Res Ctr, 1-490-2 Kouto, Tatsuno, Hyogo 6795148, Japan
[4] Tohoku Univ, Int Ctr Synchrotron Radiat Innovat Smart, Katahira 2-1-1,Aoba Ku, Sendai, Miyagi 9808577, Japan
[5] Keio Univ, Fac Sci & Technol, Dept Phys, 3-14-1 Hiyoshi,Kohoku Ku, Yokohama, Kanagawa 2238522, Japan
基金
日本学术振兴会; 日本科学技术振兴机构;
关键词
X-ray diffraction imaging; phase retrieval calculation; phase problem; COHERENT DIFFRACTION; CRYSTALLOGRAPHY; CLASSIFICATION; NANOPARTICLES; ARCHITECTURES; SCATTERING; ALGORITHM; PROTEINS; CELLS; WHOLE;
D O I
10.1107/S1600577523009827
中图分类号
TH7 [仪器、仪表];
学科分类号
0804 ; 080401 ; 081102 ;
摘要
X-ray diffraction imaging (XDI) is utilized for visualizing the structures of non-crystalline particles in material sciences and biology. In the structural analysis, phase-retrieval (PR) algorithms are applied to the diffraction amplitude data alone to reconstruct the electron density map of a specimen particle projected along the direction of the incident X-rays. However, PR calculations may not lead to good convergence because of a lack of diffraction patterns in small-angle regions and Poisson noise in X-ray detection. Therefore, the PR calculation is still a bottleneck for the efficient application of XDI in the structural analyses of non-crystalline particles. For screening maps from hundreds of trial PR calculations, we have been using a score and measuring the similarity between a pair of retrieved maps. Empirically, probable maps approximating the particle structures gave a score smaller than a threshold value, but the reasons for the effectiveness of the score are still unclear. In this study, the score is characterized in terms of the phase differences between the structure factors of the retrieved maps, the usefulness of the score in screening the maps retrieved from experimental diffraction patterns is demonstrated, and the effective resolution of similarity-score-selected maps is discussed.
引用
收藏
页码:95 / 112
页数:18
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