Genomic profiling and characterization of ocular Chlamydia trachomatis reference strain B/HAR36

被引：0

作者：

Ghasemian, Ehsan ^{[1
]}

Holland, Martin J. ^{[1
]}

机构：

[1] London Sch Hyg & Trop Med, Dept Clin Res, London, England

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 06期

基金：

英国惠康基金; 奥地利科学基金会;

关键词：

Chlamydia trachomatis; trachoma; genomics; B/Tunis864; B/HAR36; ALIGNMENT; SEQUENCE; POLYMORPHISMS; PERFORMANCE; ALGORITHMS; MAFFT;

D O I：

10.1128/mra.00029-24

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The human pathogen Chlamydia trachomatis has multiple serovariants that have distinct organotropisms. We recently revised genomic sequence data linked to ocular reference strain, B/HAR36. Now linked to its correct genomic data in the European Nucleotide Archive, we describe its genomic features.

引用

页数：4

共 23 条

[1]

Andrews S., 2010, Babraham bioinformatics-FastQC a quality control tool for high throughput sequence data

[2] The ompA gene in Chlamydia trachomatis differs in phylogeny and rate of evolution from other regions of the genome [J].

Brunelle, BW ;

Sensabaugh, GF .

INFECTION AND IMMUNITY, 2006, 74 (01) :578-585

[3] BBMerge - Accurate paired shotgun read merging via overlap [J].

Bushnell, Brian ;

Rood, Jonathan ;

Singer, Esther .

PLOS ONE, 2017, 12 (10)

[4]

Caldwell HD, 2003, J CLIN INVEST, V111, P1757, DOI [10.1172/JCI17993, 10.1172/JCI200317993]

[5] Polymorphisms in the Chlamydia trachomatis cytotoxin locus associated with ocular and genital isolates [J].

Carlson, JH ;

Hughes, S ;

Hogan, D ;

Cieplak, G ;

Sturdevant, DE ;

McClarty, G ;

Caldwell, HD ;

Belland, RJ .

INFECTION AND IMMUNITY, 2004, 72 (12) :7063-7072

[6] Mauve: Multiple alignment of conserved genomic sequence with rearrangements [J].

Darling, ACE ;

Mau, B ;

Blattner, FR ;

Perna, NT .

GENOME RESEARCH, 2004, 14 (07) :1394-1403

[7] SEVERE ENDEMIC TRACHOMA IN TUNISIA [J].

DAWSON, CR ;

DAGHFOUS, T ;

MESSADI, M ;

HOSHIWARA, I ;

SCHACHTER, J .

BRITISH JOURNAL OF OPHTHALMOLOGY, 1976, 60 (04) :245-252

[8] Inter-species lateral gene transfer focused on the Chlamydia plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability [J].

Dimond, Zoe E. ;

Suchland, Robert J. ;

Baid, Srishti ;

LaBrie, Scott D. ;

Soules, Katelyn R. ;

Stanley, Jacob ;

Carrell, Steven ;

Kwong, Forrest ;

Wang, Yibing ;

Rockey, Daniel D. ;

Hybiske, Kevin ;

Hefty, P. Scott .

MOLECULAR MICROBIOLOGY, 2021, 116 (06) :1433-1448

[9] Genomic insights into local- scale evolution of ocular Chlamydia trachomatis strains within and between individuals in Gambian trachoma-endemic villages [J].

Ghasemian, Ehsan ;

Faal, Nkoyo ;

Pickering, Harry ;

Sillah, Ansumana ;

Breuer, Judith ;

Bailey, Robin L. ;

Mabey, David ;

Holland, Martin J. .

MICROBIAL GENOMICS, 2024, 10 (03)

[10] New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 [J].

Guindon, Stephane ;

Dufayard, Jean-Francois ;

Lefort, Vincent ;

Anisimova, Maria ;

Hordijk, Wim ;

Gascuel, Olivier .

SYSTEMATIC BIOLOGY, 2010, 59 (03) :307-321

← 1 2 3 →