A genomic instability-associated lncRNA signature for predicting prognosis and biomarkers in lung adenocarcinoma

被引:2
作者
Lin, Chunxuan [1 ]
Lin, Kunpeng [2 ]
Li, Pan [3 ]
Yuan, Hai [4 ]
Lin, Xiaochun [5 ]
Dai, Yong [1 ]
Zhang, Yingying [6 ]
Xie, Zhijun [7 ]
Liu, Taisheng [6 ]
Wei, Chenggong [1 ]
机构
[1] Guangdong Prov Hosp Integrated Tradit Chinese & We, Dept Resp Med, Foshan 528200, Guangdong, Peoples R China
[2] Guangzhou Med Univ, Dept Abdominal Oncosurg, Affiliated Canc Hosp & Inst, Guangzhou, Guangdong, Peoples R China
[3] Guangzhou Med Univ, Affiliated Canc Hosp & Inst, Guangzhou, Guangdong, Peoples R China
[4] Guangzhou Hosp Integrated Chinese & Western Med, Guangzhou, Guangdong, Peoples R China
[5] South China Univ Technol, Guangzhou Peoples Hosp 1, Sch Med, Dept Med Examinat Ctr, Guangzhou 510180, Guangdong, Peoples R China
[6] Guangzhou Med Univ, Affiliated Canc Hosp & Inst, Dept Thorac Surg, Guangzhou 510095, Guangdong, Peoples R China
[7] Second Peoples Hosp Jiangmen, Dept Rehabil, Jiangmen 529030, Guangdong, Peoples R China
关键词
Lung adenocarcinoma; Genomic instability; lncRNA; Overall survival; LONG NONCODING RNA; CHROMOSOME INSTABILITY; CANCER; INACTIVATION; CHECKPOINT; MUTATIONS; LINC01116; SET;
D O I
10.1038/s41598-024-65327-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genomic instability (GI) was associated with tumorigenesis. However, GI-related lncRNA signature (GILncSig) in lung adenocarcinoma (LUAD) is still unknown. In this study, the lncRNA expression data, somatic mutation information and clinical survival information of LUAD were downloaded from The Cancer Genome Atlas (TCGA) and performed differential analysis. Functional and prognosis analysis revealed that multiple GI-related pathways were enriched. By using univariate and multivariate Cox regression analysis, 5 GI-associated lncRNAs (AC012085.2, FAM83A-AS1, MIR223HG, MIR193BHG, LINC01116) were identified and used to construct a GILncSig model. Mutation burden analysis indicated that the high-risk GI group had much higher somatic mutation count and the risk score constructed by the 5 GI-associated lncRNAs was an independent predictor for overall survival (OS) (P < 0.05). Overall, our study provides valuable insights into the involvement of GI-associated lncRNAs in LUAD and highlights their potential as therapeutic targets.
引用
收藏
页数:13
相关论文
共 50 条
[41]   Identification of a 7-miRNA signature for predicting the prognosis of patients with lung adenocarcinoma [J].
Liu, Ruijun ;
Guo, Zhiyi ;
Huang, Jia ;
Li, Jiantao ;
Tan, Qiang ;
Luo, Qingquan .
EXPERIMENTAL BIOLOGY AND MEDICINE, 2022, 247 (08) :641-657
[42]   Exploration of a Novel Circadian miRNA Pair Signature for Predicting Prognosis of Lung Adenocarcinoma [J].
Yin, Zhengrong ;
Deng, Jingjing ;
Zhou, Mei ;
Li, Minglei ;
Zhou, E. ;
Liu, Jiatong ;
Jia, Zhe ;
Yang, Guanghai ;
Jin, Yang .
CANCERS, 2022, 14 (20)
[43]   A Ubiquitin-Proteasome Gene Signature for Predicting Prognosis in Patients With Lung Adenocarcinoma [J].
Tang, Yunliang ;
Guo, Yinhong .
FRONTIERS IN GENETICS, 2022, 13
[44]   An efficient five-lncRNA signature for lung adenocarcinoma prognosis, with AL606489.1 showing sexual dimorphism [J].
Liang, Jiali ;
Jin, Weifeng ;
Xu, Huaping .
FRONTIERS IN GENETICS, 2022, 13
[45]   Characterization of cuproptosis-related lncRNA landscape for predicting the prognosis and aiding immunotherapy in lung adenocarcinoma patients [J].
Sun, Xinti ;
Song, Jiaming ;
Lu, Chenglu ;
Sun, Xiaojun ;
Yue, Haoran ;
Bao, Hongxin ;
Wang, Siben ;
Zhong, Xugang .
AMERICAN JOURNAL OF CANCER RESEARCH, 2023, 13 (03) :778-+
[46]   Cuproptosis-related lncRNA signatures: Predicting prognosis and evaluating the tumor immune microenvironment in lung adenocarcinoma [J].
Zhang, Pengpeng ;
Pei, Shengbin ;
Liu, Jianlan ;
Zhang, Xiao ;
Feng, Yanlong ;
Gong, Zeitian ;
Zeng, Tianyu ;
Li, Jun ;
Wang, Wei .
FRONTIERS IN ONCOLOGY, 2023, 12
[47]   Development of a Novel Pyroptosis-Associated lncRNA Biomarker Signature in Lung Adenocarcinoma [J].
Peng Wang ;
Zhiqiang Wang ;
Yanke Lin ;
Leandro Castellano ;
Justin Stebbing ;
Liping Zhu ;
Ling Peng .
Molecular Biotechnology, 2024, 66 :332-353
[48]   Prognostic signature of lipid metabolism associated LncRNAs predict prognosis and treatment of lung adenocarcinoma [J].
Zhao, Jie ;
Li, Guangjian ;
Zhao, Guangqiang ;
Wang, Wei ;
Shen, Zhenghai ;
Yang, Yantao ;
Huang, Yunchao ;
Ye, Lianhua .
FRONTIERS IN ONCOLOGY, 2022, 12
[49]   The signature lncRNAs associated with the lung adenocarcinoma patients prognosis [J].
Ding, Yong ;
Liu, Jian-Hong .
MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2020, 17 (02) :1593-1603
[50]   A novel mTOR-associated gene signature for predicting prognosis and evaluating tumor immune microenvironment in lung adenocarcinoma [J].
Zheng, Zhi ;
Li, Yanqi ;
Lu, Xiao ;
Zhang, Jiao ;
Liu, Quanxing ;
Zhou, Dong ;
Deng, Xufeng ;
Qiu, Yuan ;
Chen, Qian ;
Zheng, Hong ;
Dai, Jigang .
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 145