A genomic instability-associated lncRNA signature for predicting prognosis and biomarkers in lung adenocarcinoma

被引:2
作者
Lin, Chunxuan [1 ]
Lin, Kunpeng [2 ]
Li, Pan [3 ]
Yuan, Hai [4 ]
Lin, Xiaochun [5 ]
Dai, Yong [1 ]
Zhang, Yingying [6 ]
Xie, Zhijun [7 ]
Liu, Taisheng [6 ]
Wei, Chenggong [1 ]
机构
[1] Guangdong Prov Hosp Integrated Tradit Chinese & We, Dept Resp Med, Foshan 528200, Guangdong, Peoples R China
[2] Guangzhou Med Univ, Dept Abdominal Oncosurg, Affiliated Canc Hosp & Inst, Guangzhou, Guangdong, Peoples R China
[3] Guangzhou Med Univ, Affiliated Canc Hosp & Inst, Guangzhou, Guangdong, Peoples R China
[4] Guangzhou Hosp Integrated Chinese & Western Med, Guangzhou, Guangdong, Peoples R China
[5] South China Univ Technol, Guangzhou Peoples Hosp 1, Sch Med, Dept Med Examinat Ctr, Guangzhou 510180, Guangdong, Peoples R China
[6] Guangzhou Med Univ, Affiliated Canc Hosp & Inst, Dept Thorac Surg, Guangzhou 510095, Guangdong, Peoples R China
[7] Second Peoples Hosp Jiangmen, Dept Rehabil, Jiangmen 529030, Guangdong, Peoples R China
来源
SCIENTIFIC REPORTS | 2024年 / 14卷 / 01期
关键词
Lung adenocarcinoma; Genomic instability; lncRNA; Overall survival; LONG NONCODING RNA; CHROMOSOME INSTABILITY; CANCER; INACTIVATION; CHECKPOINT; MUTATIONS; LINC01116; SET;
D O I
10.1038/s41598-024-65327-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genomic instability (GI) was associated with tumorigenesis. However, GI-related lncRNA signature (GILncSig) in lung adenocarcinoma (LUAD) is still unknown. In this study, the lncRNA expression data, somatic mutation information and clinical survival information of LUAD were downloaded from The Cancer Genome Atlas (TCGA) and performed differential analysis. Functional and prognosis analysis revealed that multiple GI-related pathways were enriched. By using univariate and multivariate Cox regression analysis, 5 GI-associated lncRNAs (AC012085.2, FAM83A-AS1, MIR223HG, MIR193BHG, LINC01116) were identified and used to construct a GILncSig model. Mutation burden analysis indicated that the high-risk GI group had much higher somatic mutation count and the risk score constructed by the 5 GI-associated lncRNAs was an independent predictor for overall survival (OS) (P < 0.05). Overall, our study provides valuable insights into the involvement of GI-associated lncRNAs in LUAD and highlights their potential as therapeutic targets.
引用
收藏
页数:13
相关论文
共 50 条
[21]   A disulfidptosis-related lncRNA signature for predicting prognosis and evaluating the tumor immune microenvironment of lung adenocarcinoma [J].
Zipei Song ;
Xincen Cao ;
Xiaokun Wang ;
Yuting Li ;
Weiran Zhang ;
Yuheng Wang ;
Liang Chen .
Scientific Reports, 14
[22]   A disulfidptosis-related lncRNA signature for predicting prognosis and evaluating the tumor immune microenvironment of lung adenocarcinoma [J].
Song, Zipei ;
Cao, Xincen ;
Wang, Xiaokun ;
Li, Yuting ;
Zhang, Weiran ;
Wang, Yuheng ;
Chen, Liang .
SCIENTIFIC REPORTS, 2024, 14 (01)
[23]   A novel 8-genome instability-associated lncRNAs signature predicting prognosis and drug sensitivity in gastric cancer [J].
Yi, Changhong ;
Zhang, Xiulan ;
Chen, Xia ;
Huang, Birun ;
Song, Jing ;
Ma, Minghui ;
Yuan, Xiaolu ;
Zhang, Chaohao .
INTERNATIONAL JOURNAL OF IMMUNOPATHOLOGY AND PHARMACOLOGY, 2022, 36
[24]   Machine learning-based integration develops an immunogenic cell death-derived lncRNA signature for predicting prognosis and immunotherapy response in lung adenocarcinoma [J].
Sun, Jiazheng ;
Guo, Hehua ;
Zhang, Siyu ;
Nie, Yalan ;
Zhou, Sirui ;
Zeng, Yulan ;
Sun, Yalu .
SCIENTIFIC REPORTS, 2024, 14 (01)
[25]   Screening and identification of biomarkers associated with the diagnosis and prognosis of lung adenocarcinoma [J].
Wang, Yanyun ;
Zhang, Lin ;
Chen, Yitong ;
Li, Man ;
Ha, Minwen ;
Li, Songbai .
JOURNAL OF CLINICAL LABORATORY ANALYSIS, 2020, 34 (10)
[26]   Development of a Novel Pyroptosis-Associated lncRNA Biomarker Signature in Lung Adenocarcinoma [J].
Wang, Peng ;
Wang, Zhiqiang ;
Lin, Yanke ;
Castellano, Leandro ;
Stebbing, Justin ;
Zhu, Liping ;
Peng, Ling .
MOLECULAR BIOTECHNOLOGY, 2024, 66 (02) :332-353
[27]   Identification and Validation of a Three Pyroptosis-Related lncRNA Signature for Prognosis Prediction in Lung Adenocarcinoma [J].
Liu, Jichang ;
Liu, Qiang ;
Shen, Hongchang ;
Liu, Yong ;
Wang, Yadong ;
Wang, Guanghui ;
Du, Jiajun .
FRONTIERS IN GENETICS, 2022, 13
[28]   A novel aging-associated lncRNA signature for predicting prognosis in osteosarcoma [J].
He, Yi ;
Huang, Xiao ;
Ma, Yajie ;
Yang, Guohui ;
Cui, Yuqing ;
Lv, Xuefeng ;
Zhao, Rongling ;
Jin, Huifang ;
Tong, Yalin ;
Zhang, Xinyu ;
Li, Jitian ;
Peng, Mengle .
SCIENTIFIC REPORTS, 2024, 14 (01)
[29]   A Novel m6A-Related LncRNA Signature for Predicting Prognosis, Chemotherapy and Immunotherapy Response in Patients with Lung Adenocarcinoma [J].
Shen, Yefeng ;
Wang, Shaochun ;
Wu, Yuanzhou .
CELLS, 2022, 11 (15)
[30]   Mutation-derived, genomic instability-associated lncRNAs are prognostic markers in gliomas [J].
Li, Shenglun ;
Chen, Yujia ;
Guo, Yuduo ;
Xu, Jiacheng ;
Wang, Xiang ;
Ning, Weihai ;
Ma, Lixin ;
Qu, Yanming ;
Zhang, Mingshan ;
Zhang, Hongwei .
PEERJ, 2023, 11