A scoping review of machine learning for sepsis prediction- feature engineering strategies and model performance: a step towards explainability

被引:11
作者
Bomrah, Sherali [1 ,2 ,3 ]
Uddin, Mohy [4 ]
Upadhyay, Umashankar [1 ,2 ,5 ]
Komorowski, Matthieu [6 ]
Priya, Jyoti [1 ,2 ]
Dhar, Eshita [1 ,2 ]
Hsu, Shih-Chang [7 ,8 ]
Syed-Abdul, Shabbir [1 ,2 ,9 ]
机构
[1] Taipei Med Univ, Grad Inst Biomed Informat, Coll Med Sci & Technol, 291,Zhongzheng Rd, New Taipei City 235, Taiwan
[2] Taipei Med Univ, Coll Med Sci & Technol, Int Ctr Hlth Informat Technol, Taipei 235, Taiwan
[3] Taipei Med Univ, Coll Med, Taipei 110, Taiwan
[4] King Saud Bin Abdulaziz Univ Hlth Sci, King Abdullah Int Med Res Ctr, Res Qual Management Sect, Minist Natl Guard Hlth Affairs, Riyadh 11426, Saudi Arabia
[5] Shoolini Univ Biotechnol & Management Sci, Sch Biotechnol & Appl Sci, Solan 173229, India
[6] Imperial Coll London, Fac Med, Dept Surg & Canc, South Kensington Campus, London, England
[7] Taipei Med Univ, Coll Med, Sch Med, Dept Emergency, Taipei 106, Taiwan
[8] Taipei Med Univ, Wan Fang Hosp, Emergency Dept, Taipei 116, Taiwan
[9] Taipei Med Univ, Coll Nursing, Sch Gerontol & Long Term Care, Taipei, Taiwan
基金
英国科研创新办公室;
关键词
Machine learning; Sepsis prediction; Scoping review; Critical features; Performance evaluation; Clinical outcome; Feature engineering;
D O I
10.1186/s13054-024-04948-6
中图分类号
R4 [临床医学];
学科分类号
1002 ; 100602 ;
摘要
Background Sepsis, an acute and potentially fatal systemic response to infection, significantly impacts global health by affecting millions annually. Prompt identification of sepsis is vital, as treatment delays lead to increased fatalities through progressive organ dysfunction. While recent studies have delved into leveraging Machine Learning (ML) for predicting sepsis, focusing on aspects such as prognosis, diagnosis, and clinical application, there remains a notable deficiency in the discourse regarding feature engineering. Specifically, the role of feature selection and extraction in enhancing model accuracy has been underexplored.Objectives This scoping review aims to fulfill two primary objectives: To identify pivotal features for predicting sepsis across a variety of ML models, providing valuable insights for future model development, and To assess model efficacy through performance metrics including AUROC, sensitivity, and specificity.Results The analysis included 29 studies across diverse clinical settings such as Intensive Care Units (ICU), Emergency Departments, and others, encompassing 1,147,202 patients. The review highlighted the diversity in prediction strategies and timeframes. It was found that feature extraction techniques notably outperformed others in terms of sensitivity and AUROC values, thus indicating their critical role in improving sepsis prediction models.Conclusion Key dynamic indicators, including vital signs and critical laboratory values, are instrumental in the early detection of sepsis. Applying feature selection methods significantly boosts model precision, with models like Random Forest and XG Boost showing promising results. Furthermore, Deep Learning models (DL) reveal unique insights, spotlighting the pivotal role of feature engineering in sepsis prediction, which could greatly benefit clinical practice.
引用
收藏
页数:16
相关论文
共 39 条
[1]   A Deep Learning-Based Sepsis Estimation Scheme [J].
Al-Mualemi, Bilal Yaseen ;
Lu, Lu .
IEEE ACCESS, 2021, 9 :5442-5452
[2]   Machine Learning for Early Prediction of Sepsis in Intensive Care Unit (ICU) Patients [J].
Alanazi, Abdullah ;
Aldakhil, Lujain ;
Aldhoayan, Mohammed ;
Aldosari, Bakheet .
MEDICINA-LITHUANIA, 2023, 59 (07)
[3]   Using machine learning for the early prediction of sepsis-associated ARDS in the ICU and identification of clinical phenotypes with differential responses to treatment [J].
Bai, Yu ;
Xia, Jingen ;
Huang, Xu ;
Chen, Shengsong ;
Zhan, Qingyuan .
FRONTIERS IN PHYSIOLOGY, 2022, 13
[4]   Machine-Learning-Based Laboratory Developed Test for the Diagnosis of Sepsis in High-Risk Patients [J].
Calvert, Jacob ;
Saber, Nicholas ;
Hoffman, Jana ;
Das, Ritankar .
DIAGNOSTICS, 2019, 9 (01)
[5]   Machine Learning Models for Early Prediction of Sepsis on Large Healthcare Datasets [J].
Camacho-Cogollo, Javier Enrique ;
Bonet, Isis ;
Gil, Bladimir ;
Iadanza, Ernesto .
ELECTRONICS, 2022, 11 (09)
[6]   Early Identification of Patients at Risk of Sepsis in a Hospital Environment [J].
Cesario, Everton Osnei ;
Gumiel, Yohan Bonescki ;
Marins Martins, Marcia Cristina ;
de Carvalho Hessel Dias, Viviane Maria ;
Moro, Claudia ;
Carvalho, Deborah Ribeiro .
BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY, 2021, 64
[7]   Evaluating machine learning models for sepsis prediction: A systematic review of methodologies [J].
Deng, Hong-Fei ;
Sun, Ming-Wei ;
Wang, Yu ;
Zeng, Jun ;
Yuan, Ting ;
Li, Ting ;
Li, Di-Huan ;
Chen, Wei ;
Zhou, Ping ;
Wang, Qi ;
Jiang, Hua .
ISCIENCE, 2022, 25 (01)
[8]   Prediction of sepsis onset in hospital admissions using survival analysis [J].
DeShon, Brandon ;
Dummitt, Benjamin ;
Allen, Joshua ;
Yount, Byron .
JOURNAL OF CLINICAL MONITORING AND COMPUTING, 2022, 36 (06) :1611-1619
[9]   Early prediction of sepsis using double fusion of deep features and handcrafted features [J].
Duan, Yongrui ;
Huo, Jiazhen ;
Chen, Mingzhou ;
Hou, Fenggang ;
Yan, Guoliang ;
Li, Shufang ;
Wang, Haihui .
APPLIED INTELLIGENCE, 2023, 53 (14) :17903-17919
[10]   Predictive modeling of clinical trial terminations using feature engineering and embedding learning [J].
Elkin, Magdalyn E. ;
Zhu, Xingquan .
SCIENTIFIC REPORTS, 2021, 11 (01)