Therapeutic targeting Tudor domains in leukemia via CRISPR-Scan Assisted Drug Discovery

被引:5
作者
Chan, Anthony K. N. [1 ,2 ]
Han, Li [1 ,3 ]
Delaney, Christopher D. [4 ,5 ]
Wang, Xueer [1 ]
Mukhaleva, Elizaveta [6 ]
Li, Mingli [1 ]
Yang, Lu [1 ,2 ]
Pokharel, Sheela Pangeni [1 ,2 ]
Mattson, Nicole [1 ]
Garcia, Michelle [1 ,7 ]
Wang, Bintao [1 ]
Xu, Xiaobao [1 ]
Zhang, Leisi [1 ]
Singh, Priyanka [1 ]
Elsayed, Zeinab [1 ]
Chen, Renee [1 ]
Kuang, Benjamin [1 ]
Wang, Jinhui [8 ]
Yuan, Yate-Ching [6 ]
Chen, Bryan [1 ]
Chan, Lai N. [9 ,10 ]
Rosen, Steven T. [8 ]
Horne, David [8 ]
Muschen, Markus [9 ]
Chen, Jianjun [1 ,8 ]
Vaidehi, Nagarajan [6 ,8 ]
Armstrong, Scott A. [5 ]
Su, Rui [1 ,8 ]
Chen, Chun-Wei [1 ,2 ,8 ]
机构
[1] City Hope Natl Med Ctr, Beckman Res Inst, Dept Syst Biol, Duarte, CA 91010 USA
[2] City Hope Natl Med Ctr, Beckman Res Inst, Div Epigenet & Transcript Engn, Duarte, CA 91010 USA
[3] China Med Univ, Sch Pharm, Shenyang, Liaoning, Peoples R China
[4] Duke Univ, Sch Med, Durham, NC USA
[5] Dana Farber Canc Inst, Harvard Med Sch, Dept Pediat, Boston, MA USA
[6] City Hope Natl Med Ctr, Beckman Res Inst, Dept Computat & Quantitat Med, Duarte, CA USA
[7] Dartmouth Coll, Dept Chem, Hanover, NH USA
[8] City Hope Comprehens Canc Ctr, Duarte, CA 91010 USA
[9] Yale Sch Med, Ctr Mol & Cellular Oncol, Yale Canc Ctr, New Haven, CT USA
[10] Cleveland Clin, Lerner Res Inst, Dept Canc Biol, Cleveland, OH USA
基金
美国国家卫生研究院;
关键词
LINKS HISTONE ACETYLATION; ACETYLTRANSFERASE ACTIVITY; GENE-EXPRESSION; METHYLATION; DOCKING; RECRUITMENT; INHIBITION; PROTEOMICS; LANDSCAPE; DOT1L;
D O I
10.1126/sciadv.adk3127
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Epigenetic dysregulation has been reported in multiple cancers including leukemias. Nonetheless, the roles of the epigenetic reader Tudor domains in leukemia progression and therapy remain unexplored. Here, we conducted a Tudor domain-focused CRISPR screen and identified SGF29, a component of SAGA/ATAC acetyltransferase complexes, as a crucial factor for H3K9 acetylation, ribosomal gene expression, and leukemogenesis. To facilitate drug development, we integrated the CRISPR tiling scan with compound docking and molecular dynamics simulation, presenting a generally applicable strategy called CRISPR-Scan Assisted Drug Discovery (CRISPR-SADD). Using this approach, we identified a lead inhibitor that selectively targets SGF29's Tudor domain and demonstrates efficacy against leukemia. Furthermore, we propose that the structural genetics approach used in our study can be widely applied to diverse fields for de novo drug discovery.
引用
收藏
页数:16
相关论文
共 62 条
[1]   Epigenetic protein families: a new frontier for drug discovery [J].
Arrowsmith, Cheryl H. ;
Bountra, Chas ;
Fish, Paul V. ;
Lee, Kevin ;
Schapira, Matthieu .
NATURE REVIEWS DRUG DISCOVERY, 2012, 11 (05) :384-400
[2]   Inhibitors of histone acetyltransferases KAT6A/B induce senescence and arrest tumour growth [J].
Baell, Jonathan B. ;
Leaver, David J. ;
Hermans, Stefan J. ;
Kelly, Gemma L. ;
Brennan, Margs S. ;
Downer, Natalie L. ;
Nguyen, Nghi ;
Wichmann, Johannes ;
Mcrae, Helen M. ;
Yang, Yuqing ;
Cleary, Ben ;
Lagiakos, H. Rachel ;
Mieruszynski, Stephen ;
Pacini, Guido ;
Vanyai, Hannah K. ;
Bergamasco, Maria I. ;
May, Rose E. ;
Davey, Bethany K. ;
Morgan, Kimberly J. ;
Sealey, Andrew J. ;
Wang, Beinan ;
Zamudio, Natasha ;
Wilcox, Stephen ;
Garnham, Alexandra L. ;
Sheikh, Bilal N. ;
Aubrey, Brandon J. ;
Doggett, Karen ;
Chung, Matthew C. ;
de Silva, Melanie ;
Bentley, John ;
Pilling, Pat ;
Hattarki, Meghan ;
Dolezal, Olan ;
Dennis, Matthew L. ;
Falk, Hendrik ;
Ren, Bin ;
Charman, Susan A. ;
White, Karen L. ;
Rautela, Jai ;
Newbold, Andrea ;
Hawkins, Edwin D. ;
Johnstone, Ricky W. ;
Huntington, Nicholas D. ;
Peat, Thomas S. ;
Heath, Joan K. ;
Strasser, Andreas ;
Parker, Michael W. ;
Smyth, Gordon K. ;
Street, Ian P. ;
Monahan, Brendon J. .
NATURE, 2018, 560 (7717) :253-+
[3]   MLL-Rearranged Leukemia Is Dependent on Aberrant H3K79 Methylation by DOT1L [J].
Bernt, Kathrin M. ;
Zhu, Nan ;
Sinha, Amit U. ;
Vempati, Sridhar ;
Faber, Joerg ;
Krivtsov, Andrei V. ;
Feng, Zhaohui ;
Punt, Natalie ;
Daigle, Amanda ;
Bullinger, Lars ;
Pollock, Roy M. ;
Richon, Victoria M. ;
Kung, Andrew L. ;
Armstrong, Scott A. .
CANCER CELL, 2011, 20 (01) :66-78
[4]   Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation [J].
Bian, Chuanbing ;
Xu, Chao ;
Ruan, Jianbin ;
Lee, Kenneth K. ;
Burke, Tara L. ;
Tempel, Wolfram ;
Barsyte, Dalia ;
Li, Jing ;
Wu, Minhao ;
Zhou, Bo O. ;
Fleharty, Brian E. ;
Paulson, Ariel ;
Allali-Hassani, Abdellah ;
Zhou, Jin-Qiu ;
Mer, Georges ;
Grant, Patrick A. ;
Workman, Jerry L. ;
Zang, Jianye ;
Min, Jinrong .
EMBO JOURNAL, 2011, 30 (14) :2829-2842
[5]   One step generation of customizable gRNA vectors for multiplex CRISPR approaches through string assembly gRNA cloning (STAgR) [J].
Breunig, Christopher T. ;
Durovic, Tamara ;
Neuner, Andrea M. ;
Baumann, Valentin ;
Wiesbeck, Maximilian F. ;
Koeferle, Anna ;
Goetz, Magdalena ;
Ninkovic, Jovica ;
Stricker, Stefan H. .
PLOS ONE, 2018, 13 (04)
[6]   Leukemia Cell of Origin Influences Apoptotic Priming and Sensitivity to LSD1 Inhibition [J].
Cai, Sheng F. ;
Chu, S. Haihua ;
Goldberg, Aaron D. ;
Parvin, Salma ;
Koche, Richard P. ;
Glass, Jacob L. ;
Stein, Eytan M. ;
Tallman, Martin S. ;
Sen, Filiz ;
Famulare, Christopher A. ;
Cusan, Monica ;
Huang, Chun-Hao ;
Chen, Chun-Wei ;
Zou, Lihua ;
Cordner, Keith B. ;
DelGaudio, Nicole L. ;
Durani, Vidushi ;
Kini, Mitali ;
Rex, Madison ;
Tian, Helen S. ;
Zuber, Johannes ;
Baslan, Timour ;
Lowe, Scott W. ;
Rienhoff, Hugh Y., Jr. ;
Letai, Anthony ;
Levine, Ross L. ;
Armstrong, Scott A. .
CANCER DISCOVERY, 2020, 10 (10) :1500-1513
[7]   Rewiring the Epigenetic Networks in MLL-Rearranged Leukemias: Epigenetic Dysregulation and Pharmacological Interventions [J].
Chan, Anthony K. N. ;
Chen, Chun-Wei .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2019, 7
[8]   DOT1L inhibits SIRT1-mediated epigenetic silencing to maintain leukemic gene expression in MLL-rearranged leukemia [J].
Chen, Chun-Wei ;
Koche, Richard P. ;
Sinha, Amit U. ;
Deshpande, Aniruddha J. ;
Zhu, Nan ;
Eng, Rowena ;
Doench, John G. ;
Xu, Haiming ;
Chu, Scott H. ;
Qi, Jun ;
Wang, Xi ;
Delaney, Christopher ;
Bernt, Kathrin M. ;
Root, David E. ;
Hahn, William C. ;
Bradner, James E. ;
Armstrong, Scott A. .
NATURE MEDICINE, 2015, 21 (04) :335-+
[9]   Potent inhibition of DOT1L as treatment of MLL-fusion leukemia [J].
Daigle, Scott R. ;
Olhava, Edward J. ;
Therkelsen, Carly A. ;
Basavapathruni, Aravind ;
Jin, Lei ;
Boriack-Sjodin, P. Ann ;
Allain, Christina J. ;
Klaus, Christine R. ;
Raimondi, Alejandra ;
Scott, Margaret Porter ;
Waters, Nigel J. ;
Chesworth, Richard ;
Moyer, Mikel P. ;
Copeland, Robert A. ;
Richon, Victoria M. ;
Pollock, Roy M. .
BLOOD, 2013, 122 (06) :1017-1025
[10]  
Dallakyan S, 2015, METHODS MOL BIOL, V1263, P243, DOI 10.1007/978-1-4939-2269-7_19