Graph neural network coarse-grain force field for the molecular crystal RDX

被引:1
|
作者
Lee, Brian H. [1 ,2 ]
Larentzos, James P. [3 ]
Brennan, John K. [3 ]
Strachan, Alejandro [1 ,2 ]
机构
[1] Purdue Univ, Sch Mat Engn, Lafayette, IN 47907 USA
[2] Purdue Univ, Birck Nanotechnol Ctr, Lafayette, IN 47907 USA
[3] Army Res Lab, US Army Combat Capabil Dev Command DEVCOM, Aberdeen Proving Ground, MD USA
关键词
DYNAMICS; SIMULATIONS; MODELS; PREDICTION; PRESSURE; POLYMERS;
D O I
10.1038/s41524-024-01407-2
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Condense phase molecular systems organize in wide range of distinct molecular configurations, including amorphous melt and glass as well as crystals often exhibiting polymorphism, that originate from their intricate intra- and intermolecular forces. While accurate coarse-grain (CG) models for these materials are critical to understand phenomena beyond the reach of all-atom simulations, current models cannot capture the diversity of molecular structures. We introduce a generally applicable approach to develop CG force fields for molecular crystals combining graph neural networks (GNN) and data from an all-atom simulations and apply it to the high-energy density material RDX. We address the challenge of expanding the training data with relevant configurations via an iterative procedure that performs CG molecular dynamics of processes of interest and reconstructs the atomistic configurations using a pre-trained neural network decoder. The multi-site CG model uses a GNN architecture constructed to satisfy translational invariance and rotational covariance for forces. The resulting model captures both crystalline and amorphous states for a wide range of temperatures and densities.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] Coarse-grain model for internal energy excitation and dissociation of molecular nitrogen
    Magin, Thierry E.
    Panesi, Marco
    Bourdon, Anne
    Jaffe, Richard L.
    Schwenke, David W.
    CHEMICAL PHYSICS, 2012, 398 : 90 - 95
  • [22] Energy conservation in adaptive hybrid atomistic/coarse-grain molecular dynamics
    Ensing, Bernd
    Nielsen, Steven O.
    Moore, Preston B.
    Klein, Michael L.
    Parrinello, Michele
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (03) : 1100 - 1105
  • [23] Sputtering polymers with buckminsterfullerene projectiles: A Coarse-Grain molecular dynamics study
    Delcorte, Arnaud
    Garrison, Barbara J.
    JOURNAL OF PHYSICAL CHEMISTRY C, 2007, 111 (42): : 15312 - 15324
  • [24] Molecular Dynamics Simulation of Coarse-Grain Model of Silicon Functionalized Graphene
    Hui, Zhixin
    Liu, Xiaolin
    2015 4TH INTERNATIONAL CONFERENCE ON MECHANICS AND CONTROL ENGINEERING (ICMCE 2015), 2015, 35
  • [25] Coarse-grain molecular dynamics study of nanotube insertion in lipid bilayers.
    Ensing, B
    Nielsen, SO
    Moore, PB
    Klein, ML
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2004, 228 : U221 - U221
  • [26] Network topology exploration of mesh-based coarse-grain reconfigurable architectures
    Bansal, N
    Gupta, S
    Dutt, N
    Nicolau, A
    Gupta, R
    DESIGN, AUTOMATION AND TEST IN EUROPE CONFERENCE AND EXHIBITION, VOLS 1 AND 2, PROCEEDINGS, 2004, : 474 - 479
  • [27] An Area-Efficient Interconnection Network for Coarse-Grain Reconfigurable Cryptographic Array
    Qu, Tongzhou
    Dai, Zibin
    Nan, Longmei
    Li, Wei
    Yin, Anqi
    2017 IEEE 12TH INTERNATIONAL CONFERENCE ON ASIC (ASICON), 2017, : 710 - 713
  • [28] DATA-FLOW-BASED METHODOLOGY FOR COARSE-GRAIN MULTIPROCESSING ON A NETWORK OF WORKSTATIONS
    JAGANNATHAN, R
    DOWNING, AR
    ZAUMEN, WT
    LEE, RKS
    PROCEEDINGS OF THE 1989 INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING, VOL 2: SOFTWARE, 1989, : 209 - 216
  • [29] Coarse-grain molecular dynamics study of fullerene transport across a cell membrane
    Sridhar, Akshay
    Srikanth, Bharath
    Kumar, Amit
    Dasmahapatra, Ashok Kumar
    JOURNAL OF CHEMICAL PHYSICS, 2015, 143 (02):
  • [30] Self-assembly and properties of diblock copolymers by coarse-grain molecular dynamics
    Srinivas, G
    Discher, DE
    Klein, ML
    NATURE MATERIALS, 2004, 3 (09) : 638 - 644