Graph neural network coarse-grain force field for the molecular crystal RDX

被引:1
作者
Lee, Brian H. [1 ,2 ]
Larentzos, James P. [3 ]
Brennan, John K. [3 ]
Strachan, Alejandro [1 ,2 ]
机构
[1] Purdue Univ, Sch Mat Engn, Lafayette, IN 47907 USA
[2] Purdue Univ, Birck Nanotechnol Ctr, Lafayette, IN 47907 USA
[3] Army Res Lab, US Army Combat Capabil Dev Command DEVCOM, Aberdeen Proving Ground, MD USA
关键词
DYNAMICS; SIMULATIONS; MODELS; PREDICTION; PRESSURE; POLYMERS;
D O I
10.1038/s41524-024-01407-2
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Condense phase molecular systems organize in wide range of distinct molecular configurations, including amorphous melt and glass as well as crystals often exhibiting polymorphism, that originate from their intricate intra- and intermolecular forces. While accurate coarse-grain (CG) models for these materials are critical to understand phenomena beyond the reach of all-atom simulations, current models cannot capture the diversity of molecular structures. We introduce a generally applicable approach to develop CG force fields for molecular crystals combining graph neural networks (GNN) and data from an all-atom simulations and apply it to the high-energy density material RDX. We address the challenge of expanding the training data with relevant configurations via an iterative procedure that performs CG molecular dynamics of processes of interest and reconstructs the atomistic configurations using a pre-trained neural network decoder. The multi-site CG model uses a GNN architecture constructed to satisfy translational invariance and rotational covariance for forces. The resulting model captures both crystalline and amorphous states for a wide range of temperatures and densities.
引用
收藏
页数:11
相关论文
共 76 条
  • [1] Machine learning approach for accurate backmapping of coarse-grained models to all-atom models
    An, Yaxin
    Deshmukh, Sanket A.
    [J]. CHEMICAL COMMUNICATIONS, 2020, 56 (65) : 9312 - 9315
  • [2] Generalized Energy-Conserving Dissipative Particle Dynamics with Mass Transfer. Part 1: Theoretical Foundation and Algorithm
    Avalos, Josep Bonet
    Lisal, Martin
    Larentzos, James P.
    Mackie, Allan D.
    Brennan, John K.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2022, 18 (12) : 7639 - 7652
  • [3] Configurational entropies of lipids in pure and mixed bilayers from atomic-level and coarse-grained molecular dynamics simulations
    Baron, Riccardo
    de Vries, Alex H.
    Huenenberger, Philippe H.
    van Gunsteren, Wilfred F.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (31) : 15602 - 15614
  • [4] E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials
    Batzner, Simon
    Musaelian, Albert
    Sun, Lixin
    Geiger, Mario
    Mailoa, Jonathan P.
    Kornbluth, Mordechai
    Molinari, Nicola
    Smidt, Tess E.
    Kozinsky, Boris
    [J]. NATURE COMMUNICATIONS, 2022, 13 (01)
  • [5] Bedrov D., 2001, Journal of Computer-Aided Materials Design, V8, P77, DOI 10.1023/A:1020046817543
  • [6] Generalized neural-network representation of high-dimensional potential-energy surfaces
    Behler, Joerg
    Parrinello, Michele
    [J]. PHYSICAL REVIEW LETTERS, 2007, 98 (14)
  • [7] Coarse-Grain Model Simulations of Nonequilibrium Dynamics in Heterogeneous Materials
    Brennan, John K.
    Lisal, Martin
    Moore, Joshua D.
    Izvekov, Sergei
    Schweigert, Igor V.
    Larentzos, James P.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2014, 5 (12): : 2144 - 2149
  • [8] CRYSTAL STRUCTURE OF ALPHA-HMX AND A REFINEMENT OF STRUCTURE OF BETA-HMX
    CADY, HH
    CROMER, DT
    LARSON, AC
    [J]. ACTA CRYSTALLOGRAPHICA, 1963, 16 (07): : 617 - &
  • [9] Simulation and understanding of atomic and molecular quantum crystals
    Cazorla, Claudio
    Boronat, Jordi
    [J]. REVIEWS OF MODERN PHYSICS, 2017, 89 (03)
  • [10] Machine learning coarse grained models for water
    Chan, Henry
    Cherukara, Mathew J.
    Narayanan, Badri
    Loeffler, Troy D.
    Benmore, Chris
    Gray, Stephen K.
    Sankaranarayanan, Subramanian K. R. S.
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)