A high-quality genome assembly of the shrubby cinquefoil (Dasiphora fruticosa)

被引:0
作者
Zhang, Xu [1 ,2 ]
Chen, Juntong [3 ]
Guo, Hongtao [4 ]
Gao, Shenghan [5 ]
Ren, Baoqing [6 ]
Sun, Yanxia [1 ,2 ]
Deng, Tao [3 ]
Sun, Hang [3 ]
Wang, Hengchang [1 ,2 ]
机构
[1] Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Specialty Ag, Wuhan Bot Garden, Wuhan 430074, Hubei, Peoples R China
[2] Chinese Acad Sci, Ctr Conservat Biol, Core Bot Gardens, Wuhan 430074, Hubei, Peoples R China
[3] Chinese Acad Sci, Key Lab Plant Divers & Biogeog East Asia, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China
[4] Xi An Jiao Tong Univ, Fac Elect & Informat Engn, Sch Comp Sci & Technol, Xian, Shaanxi, Peoples R China
[5] Xi An Jiao Tong Univ, Fac Elect & Informat Engn, Sch Automat Sci & Engn, Xian, Peoples R China
[6] Taiyuan Bot Garden, Taiyuan 030025, Shanxi, Peoples R China
关键词
ALIGNMENT; PHYLOGEOGRAPHY; ROSACEAE; TOOL;
D O I
10.1038/s41597-024-03781-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Dasiphora fruticosa (Rosaceae), commonly known as shrubby cinquefoil, is a flowering shrub of high ornamental value yet underutilized in East Asian landscapes. Given its broad elevational distribution range, D. fruticosa serves as an ideal model for studying genetic adaptations and speciation along elevation gradients. Here, we present a high-quality chromosome-scale assembly of D. fruticosa with a genome size of 249.23 Mb and a contig N50 length of 14.01 Mb. The genome sequence contains 32,613 protein-coding genes, of which 30,643 (93.96%) were functionally annotated. Compared to the published D. fruticosa genome sequence, our assembly demonstrates higher completeness and continuity. Furthermore, comparative genomic analyses provide insights into the phylogenetic relationship and high-altitude adaptation of D. fruticosa. Overall, our study offers a valuable genetic resource for both molecular and evolutionary research on shrubby cinquefoil.
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页数:8
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