A prognostic model for anoikis-related genes in pancreatic cancer

被引:3
作者
Song, Wenbin [1 ,2 ]
Hu, Haiyang [3 ]
Yuan, Zhengbo [4 ,5 ]
Yao, Hao [6 ]
机构
[1] Tianjin Med Univ, Dept Gen Surg, Gen Hosp, Tianjin 300052, Peoples R China
[2] Tianjin Key Lab Posttrauma Neuro Repair & Regener, Tianjin 300052, Peoples R China
[3] Jining Med Univ, Affiliated Hosp, Dept Cardiac Crit Care Med, Jining 272007, Peoples R China
[4] Xiamen Univ, Sch Med, 4221 Xiangan South Rd, Xiamen 361102, Peoples R China
[5] First Affiliated Hosp Xiamen Univ, Xiamen Univ, Sch Med, Dept Endocrinol & Diabet, 55 Zhenghai load, Xiamen 361001, Peoples R China
[6] Tianjin Med Univ, Hosp 2, Dept Hepatol Surg, 23 Pingjiang Rd, Tianjin 300211, Peoples R China
关键词
Pancreatic cancer; Anoikis; Prognostic model; TCGA-PAAD; ICGC-PACA; T-CELL IMMUNITY; RESISTANCE; MIGRATION; INVASION; METASTASIS; ACTIVATION; MUTATIONS; INDUCTION; ITGA3;
D O I
10.1038/s41598-024-65981-7
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Anoikis, a distinct form of programmed cell death, is crucial for both organismal development and maintaining tissue equilibrium. Its role extends to the proliferation and progression of cancer cells. This study aimed to establish an anoikis-related prognostic model to predict the prognosis of pancreatic cancer (PC) patients. Gene expression data and patient clinical profiles were sourced from The Cancer Genome Atlas (TCGA-PAAD: Pancreatic Adenocarcinoma) and the International Cancer Genome Consortium (ICGC-PACA: Pancreatic Ductal Adenocarcinoma). Non-cancerous pancreatic tissue gene expression data were obtained from the Genotype-Tissue Expression (GTEx) project. The R package was used to construct anoikis-related PC prognostic models, which were later validated with the ICGC-PACA database. Survival analyses demonstrated a poorer prognosis for patients in the high-risk group, consistent across both TCGA-PAAD and ICGC-PACA datasets. A nomogram was designed as a predictive tool to estimate patient mortality. The study also analyzed tumor mutations and immune infiltration across various risk groups, uncovering notable differences in tumor mutation patterns and immune landscapes between high- and low-risk groups. In conclusion, this research successfully developed a prognostic model centered on anoikis-related genes, offering a novel tool for predicting the clinical trajectory of PC patients.
引用
收藏
页数:16
相关论文
共 65 条
[1]   Mechanisms for Modulating Anoikis Resistance in Cancer and the Relevance of Metabolic Reprogramming [J].
Adeshakin, Funmilayo O. ;
Adeshakin, Adeleye O. ;
Afolabi, Lukman O. ;
Yan, Dehong ;
Zhang, Guizhong ;
Wan, Xiaochun .
FRONTIERS IN ONCOLOGY, 2021, 11
[2]   RhoG's Role in T Cell Activation and Function [J].
Ahmad Mokhtar, Ana Masara ;
Salikin, Nor Hawani ;
Haron, Aminah Suhaila ;
Amin-Nordin, Syafinaz ;
Hashim, Ilie Fadzilah ;
Mohd Zaini Makhtar, Muaz ;
Zulfigar, Siti Balqis ;
Ismail, Nurul Izza .
FRONTIERS IN IMMUNOLOGY, 2022, 13
[3]   Advancing on pancreatic cancer [J].
不详 .
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY, 2021, 18 (07) :447-447
[4]   Activation of c-K-ras mutations in human gastrointestinal tumors [J].
Arber, N ;
Shapira, I ;
Ratan, J ;
Stern, B ;
Hibshoosh, H ;
Moshkowitz, M ;
Gammon, M ;
Fabian, I ;
Halpern, Z .
GASTROENTEROLOGY, 2000, 118 (06) :1045-1050
[5]   High incidence of N and K-Ras activating mutations in multiple myeloma and primary plasma cell leukemia at diagnosis [J].
Bezieau, S ;
Devilder, MC ;
Avet-Loiseau, H ;
Mellerin, MP ;
Puthier, D ;
Pennarun, E ;
Rapp, MJ ;
Harousseau, JL ;
Moisan, JP ;
Bataille, R .
HUMAN MUTATION, 2001, 18 (03) :212-224
[6]   Macrophage plasticity and interaction with lymphocyte subsets: cancer as a paradigm [J].
Biswas, Subhra K. ;
Mantovani, Alberto .
NATURE IMMUNOLOGY, 2010, 11 (10) :889-896
[7]   Comparison of immune infiltrates in melanoma and pancreatic cancer highlights VISTA as a potential target in pancreatic cancer [J].
Blando, Jorge ;
Sharma, Anu ;
Higa, Maria Gisela ;
Zhao, Hao ;
Vence, Luis ;
Yadav, Shalini S. ;
Kim, Jiseong ;
Sepulveda, Alejandro M. ;
Sharp, Michael ;
Maitra, Anirban ;
Wargo, Jennifer ;
Tetzlaff, Michael ;
Broaddus, Russell ;
Katz, Matthew H. G. ;
Varadhachary, Gauri R. ;
Overman, Michael ;
Wang, Huamin ;
Yee, Cassian ;
Bernatchez, Chantale ;
Iacobuzio-Donahue, Christine ;
Basu, Sreyashi ;
Allison, James P. ;
Sharma, Padmanee .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (05) :1692-1697
[8]   CD40 Stimulation Obviates Innate Sensors and Drives T Cell Immunity in Cancer [J].
Byrne, Katelyn T. ;
Vonderheide, Robert H. .
CELL REPORTS, 2016, 15 (12) :2719-2732
[9]   Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden [J].
Chalmers, Zachary R. ;
Connelly, Caitlin F. ;
Fabrizio, David ;
Gay, Laurie ;
Ali, Siraj M. ;
Ennis, Riley ;
Schrock, Alexa ;
Campbell, Brittany ;
Shlien, Adam ;
Chmielecki, Juliann ;
Huang, Franklin ;
He, Yuting ;
Sun, James ;
Tabori, Uri ;
Kennedy, Mark ;
Lieber, Daniel S. ;
Roels, Steven ;
White, Jared ;
Otto, Geoffrey A. ;
Ross, Jeffrey S. ;
Garraway, Levi ;
Miller, Vincent A. ;
Stephens, Phillip J. ;
Frampton, Garrett M. .
GENOME MEDICINE, 2017, 9
[10]   NTRK fusion-positive cancers and TRK inhibitor therapy [J].
Cocco, Emiliano ;
Scaltriti, Maurizio ;
Drilon, Alexander .
NATURE REVIEWS CLINICAL ONCOLOGY, 2018, 15 (12) :731-747