Identification of Potential Crucial Biomarkers in STEMI Through Integrated Bioinformatic Analysis

被引:0
|
作者
Zhao, Li-Zhi [1 ,2 ]
Liang, Yi [3 ]
Yin, Ting [4 ]
Liao, Hui -Ling [1 ,2 ,6 ,7 ]
Liang, Bo [5 ,6 ,7 ]
机构
[1] Southwest Med Univ, Affiliated Tradit Chinese Med Hosp, Luzhou, Peoples R China
[2] Southwest Med Univ, Coll Integrat Tradit Chinese & Western Med, Luzhou, Peoples R China
[3] Sichuan Second Hosp TCM, Dept Geriatr, Chengdu, Peoples R China
[4] Zhejiang Univ, Sch Med, Affiliated Hosp 2, Dept Cardiol, Hangzhou, Peoples R China
[5] Army Med Univ, Mil Med Univ 3, Xinqiao Hosp,Key Lab Prevent & Treatment Chron Kid, Chongqing Clin Res Ctr Kidney & Urol Dis,Dept Neph, Chongqing, Peoples R China
[6] Army Med Univ, Mil Med Univ 3, Chongqing, Peoples R China
[7] Southwest Med Univ, Luzhou, Peoples R China
关键词
ST Elevation Myocardial Infarction; Coronary Artery Disease; Biomarkers; Computational Biology; MYOCARDIAL-INFARCTION; PATHWAY;
D O I
10.36660/abc.20230462
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background: ST-segment elevation myocardial infarction (STEMI) is one of the leading causes of fatal cardiovascular diseases, which have been the prime cause of mortality worldwide. Diagnosis in the early phase would benefit clinical intervention and prognosis, but the exploration of the biomarkers of STEMI is still lacking. Objectives: In this study, we conducted a bioinformatics analysis to identify potential crucial biomarkers in the progress of STEMI. Methods: We obtained GSE59867 for STEMI and stable coronary artery disease (SCAD) patients. Differentially expressed genes (DEGs) were screened with the threshold of |log2fold change| > 0.5 and p <0.05. Based on these genes, we conducted enrichment analysis to explore the potential relevance between genes and to screen hub genes. Subsequently, hub genes were analyzed to detect related miRNAs and DAVID to detect transcription factors for further analysis. Finally, GSE62646 was utilized to assess DEGs specificity, with genes demonstrating AUC results exceeding 75%, indicating their potential as candidate biomarkers. Results: 133 DEGs between SCAD and STEMI were obtained. Then, the PPI network of DEGs was constructed using String and Cytoscape, and further analysis determined hub genes and 6 molecular complexes. Functional enrichment analysis of the DEGs suggests that pathways related to inflammation, metabolism, and immunity play a pivotal role in the progression from SCAD to STEMI. Besides, related-miRNAs were predicted, has-miR-124, has-miR-130a/b, and has-miR-301a/b regulated the expression of the largest number of genes. Meanwhile, Transcription factors analysis indicate that EVI1, AML1, GATA1, and PPARG are the most enriched gene. Finally, ROC curves demonstrate that MS4A3, KLRC4, KLRD1, AQP9, and CD14 exhibit both high sensitivity and specificity in predicting STEMI. Conclusions: This study revealed that immunity, metabolism, and inflammation are involved in the development of STEMI derived from SCAD, and 6 genes, including MS4A3, KLRC4, KLRD1, AQP9, CD14, and CCR1, could be employed as candidate biomarkers to STEMI.
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页数:13
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